Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq34573 118 1e-21 seq511598 107 2e-18 seq293684 84.2 3e-11 >seq34573 Length=79373 Score = 118 bits (130), Expect = 1e-21 Identities = 179/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 146019 GTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGAC 146078 ||| ||| |||| ||||| ||| |||| || ||||| ||||| ||||| ||||| || Sbjct 21786 GTAGTCTCCCTTGAAGTCCGTGTAGTCGGCTCCAAAGTGTCTCCATTGGAAGCCGTACAC 21727 Query 146079 GGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGA 146138 || |||| |||||| ||| | || | || || | | | ||||| || | || Sbjct 21726 AGGTCCCAAGTCCCCTTCCTCTCGATGACTGAGACCCCTCGAGTCCAGGAACTCTCTTGA 21667 Query 146139 CCCGTTGGCGTCCCAGATCTTGACGCCCC--TCGCGGAG-AGCTCATTGGAGTCCGTGGA 146195 || ||| |||||||||| | || ||| || | ||| || |||| | ||||| Sbjct 21666 TCCATTGCCGTCCCAGATATGGATGCCTTGATCCCTGAGGAG---ATTGCCATTTGTGGA 21610 Query 146196 CCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGT 146255 || |||| |||||| | |||||||| | ||| || |||||||| |||||||| ||||| Sbjct 21609 TCCTCTGAGGAACCACAAGAGCTCTTCCATGACGCCTCTCCAGAACACCCTCTTCGTGGT 21550 Query 146256 CAGCAGGGGGAA 146267 |||||| || || Sbjct 21549 CAGCAGAGGCAA 21538 >seq511598 Length=303 Score = 107 bits (118), Expect = 2e-18 Identities = 197/282 (70%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 145990 TCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCT--GTCTTGGAGTCCACGTACGCGG 146047 ||| |||||||||| ||||||| | | |||| ||| |||| | || ||| ||| Sbjct 284 TCCTTGAGCTGGTCGACGCCCTTGCTCTGGTAGTCTCCGTCT--GCATCGGTATACTCGG 227 Query 146048 CCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC-CCTGTGC 146106 | ||||| || ||||||||||| ||||||||||| ||||| || || ||| | |||| Sbjct 226 CACCGAAATGTCTCCACTGGAAGCCGTAGACGGGTCCCAGATCACC-TTCTCTGCGGTGC 168 Query 146107 CCCAGCCCGGCCCGGGC--GAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGC 146164 ||| || || | | ||| ||| || ||| || ||| |||||||||| | | | Sbjct 167 TGCAGTCC--CCTCGACTTGAGAAAGGCCTTGGATCCATTGCCGTCCCAGATGTGAATGT 110 Query 146165 CCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGA 146224 | | | | || | ||||| || ||| | || || |||||| |||||||| || | Sbjct 109 CTCGGTCTGTCAGGACTTTGGAATCTGTGCAGCCAGCGACGAACCACAGCAGCTCCTCCA 50 Query 146225 GGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 ||| || | ||| ||||| | ||| || |||| ||||||| Sbjct 49 TGACTCCTCGCCAAAAGACTCGCTTCGTCGTCAAGAGGGGGA 8 >seq293684 Length=139 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 146036 CCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGG 146095 || ||||| || ||||| |||| |||||| ||||||||||| || || ||||| || Sbjct 136 CCTCGTACTTTGCTCCGAAATGCCGCCACTGAAACCCGTAGACTGGGCCTAGGTCGCCCT 77 Query 146096 GCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGA 146155 ||| |||| | |||||| ||| ||||| | || || |||||||| ||||||||| Sbjct 76 CCTCTCTGTCCTTGAGCCCGATCCGTTCGAGGTACTCGCGCGACCCGTTCCCGTCCCAGA 17 Query 146156 T 146156 | Sbjct 16 T 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586005897036600