Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq12300 86.0 5e-12 >seq12300 Length=44855 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| | || || |||||||| ||| ||| || | | Sbjct 13516 ATGCAAATCTTTGTCAAAACCCTTACCGGGAAAACCATAACCTTGGAAGTTGAGAGCTCG 13457 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || ||||| || ||| | || |||||| Sbjct 13456 GACACCATTGATAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAG 13397 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| ||||| ||| | |||||| ||| | ||||||||||| Sbjct 13396 CAGAGGTTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTTGCCGATTACAAC 13337 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| || || ||| ||||| | || | ||||| || Sbjct 13336 ATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGTGG 13290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | || || |||||||| |||||||| ||| || ||| | Sbjct 12833 AATGCAGATTTTTGTGAAGACTTTGACGGGAAAAACCATAACCTTGGAGGTTGAAAGTTC 12774 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || ||||| || || || ||||| || | || ||| || Sbjct 12773 GGATACTATTGACAATGTCAAGGCGAAGATACAAGACAAAGAGGGCATCCCACCAGACCA 12714 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| ||||||||||| || || || | |||||| | || | || |||||||| Sbjct 12713 GCAAAGGCTTATCTTTGCAGGAAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTACAA 12654 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||| ||||| ||||| ||||| ||||| | || || || || ||| Sbjct 12653 TATTCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCTTGCGGGGTGGG 12605 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| ||||| ||||| ||||| ||||| || | |||||| | |||| |||| ||| Sbjct 12490 GATCAGCAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGAACTCTGGCGGAT 12431 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||| |||||||| ||||| || ||| Sbjct 12430 TACAATATCCAAAAGGAGTCTACCCTGCAC 12401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408033590087810