Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12300 127 3e-24 seq2836 123 4e-23 >seq12300 Length=44855 Score = 127 bits (140), Expect = 3e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| | || ||||||||||| ||| | || ||||| Sbjct 13289 AATGCAAATTTTTGTGAAGACCTTGACCGGCAAAACTATCACTTTGGAAGTTGAAAGCTC 13230 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| |||| |||| || || || |||||||| || ||||| || || || | Sbjct 13229 TGATACCATTGATAATGTTAAGGCA-AAGATCCAAGATAAGGAGGGTATCCCCCCGGACC 13171 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | |||||||| || || ||| |||| ||| | | || ||| ||||||| Sbjct 13170 AGCAGAGGTTGATTTTTGCTGGGAAGCAACTAGAAGATGGAAGGACTCTAGCTGATTATA 13111 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| || || || || ||||| ||||| | || | || ||||| || Sbjct 13110 ATATTCAGAAGGAGTCCACCTTGCACTTGGTGCTTCGACTCCGTGGTGGGAT 13059 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || || ||||| || || || | ||| | ||| Sbjct 13744 ATGCAGATATTTGTTAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 13685 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || |||||||| || || || || ||||| || || Sbjct 13684 GACACGATTGACAATGTGAAAGCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 13625 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || || ||| | |||||| |||| || || | || ||||| Sbjct 13624 CAGAGGTTAATCTTTGCTGGTAAGCAACTTGAGGATGGTCGCACTTTGGCCGACTATAAC 13565 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| |||||||| | || ||||| | || | ||||||||||| Sbjct 13564 ATCCAAAAGGAATCAACCCTTCACTTGGTGCTCCGCCTCCGAGGTGGTAT 13515 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| | || || ||||| ||||| | ||| ||||| Sbjct 12833 AATGCAGATTTTTGTGAAGACTTTGACGGGAAAAACCATAACCTTGGAGGTTGAAAGTTC 12774 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || ||| || ||||| ||||| || || ||||| || || Sbjct 12773 GGATACTATTGACAATGTCAAGGCGAAGATACAAGACAAAGAGGGCATCCCACCAGACCA 12714 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||||||||| || | || ||| | | || | | ||||| || Sbjct 12713 GCAAAGGCTTATCTTTGCAGGAAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTACAA 12654 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || || || || | ||| |||| | || || || ||||| || Sbjct 12653 TATTCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCTTGCGGGGTGGGAT 12603 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| || || || || | ||| |||| | Sbjct 12604 ATGCAGATTTTCGTGAAGACCTTGACAGGGAAGACCATTACATTGGAGGTTGAGAGTTCT 12545 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | ||| || ||||| || || || || || || || ||||| Sbjct 12544 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCAG 12485 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| |||||||| || || | || ||| | |||| | | ||||| ||| Sbjct 12484 CAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGAACTCTGGCGGATTACAAT 12425 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATT 124769 || ||||| || || || |||| | ||| | || | || |||||| || Sbjct 12424 ATCCAAAAGGAGTCTACCCTGCACCTTGTTCTTCGCCTCCGTGGTGGTTTT 12374 >seq2836 Length=35635 Score = 123 bits (136), Expect = 4e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| || || || || ||||| || | ||| | || ||| Sbjct 31971 AATGCAGATTTTTGTGAAGACTCTTACTGGAAAGACTATCACCCTTGAGGTGGAGAGCTC 31912 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||||| |||| | ||| || || |||||||| ||||| || || || |||| Sbjct 31911 C-GATACAATTGATAATGTCAAAGCAAAGATCCAAGATAAGGAAGGGATTCCTCCGGATC 31853 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || |||||||| || ||| | |||||| | || || | | ||||| | Sbjct 31852 AGCAGAGGCTCATCTTTGCAGGGAAGCAACTTGAGGATGGCCGTACTCTTGCTGATTACA 31793 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||| |||||||| | ||| | ||| | || | || ||||| || Sbjct 31792 ATATTCAAAAGGAATCAACACTCCATCTTGTTCTCCGCCTGCGTGGTGGCAT 31741 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || ||| | || || || ||||| || || || ||| | || ||||| || | Sbjct 32426 ATGCAGATCTTTGTTAAAACTCTTACAGGTAAGACAATCACTTTGGAAGTTGAAAGCTCA 32367 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| |||| | ||| || || ||||| ||||| ||||| || || ||||| Sbjct 32366 -GACACAATCGATAATGTCAAAGCAAAGATACAAGACAAAGAGGGTATTCCTCCAGATCA 32308 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||| ||||| ||| | |||||| ||||||| || | || || || Sbjct 32307 GCAGAGATTGATCTTTGCGGGAAAGCAACTTGAGGATGGTCGAACTTTGGCTGACTACAA 32248 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || ||||||||||| | || | || ||||| || Sbjct 32247 CATTCAGAAAGAGTCCACCTTGCATTTGGTCCTCCGCCTCCGTGGTGGAAT 32197 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | ||||| || || || || | ||| | || | Sbjct 31742 ATGCAGATTTTTGTGAAAACCTTGACAGGAAAGACGATCACACTTGAGGTGGAGAGTTCT 31683 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| | ||| ||| ||||| || || || || || ||||| ||||| Sbjct 31682 GATACCATCGATAATGTGAAAGCGAAGATTCAGGACAAGGAGGGGATCCCACCGGATCAG 31623 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | |||||| | || || ||| |||||| || Sbjct 31622 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTAGCAGATTACAAC 31563 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || ||||| | ||| | || | ||||||||||| Sbjct 31562 ATTCAGAAGGAGAGCACCCTGCATCTTGTTCTCCGCCTCCGAGGTGGTAT 31513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750244156272000