Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq12300 91.5 2e-13 seq2836 84.2 3e-11 >seq12300 Length=44855 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/228 (67%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||| | ||||| || || || || || || ||||||||||| | Sbjct 13062 CCACCACGGAGTCGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATATTATAATCAGCT 13121 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| |||| ||| || |||||||||||||| || ||||| ||||| || Sbjct 13122 AGAGTCCTTCCATCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGG 13181 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || || |||||||| ||||| || ||||| ||| Sbjct 13182 ATACCCTCCTTATCTTGGATCTTTGCCTTAACATTATCAATGGTATCAGAGCTTTCAACT 13241 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || | ||||| ||||| || || || || || | || ||||||||| Sbjct 13242 TCCAAAGTGATAGTTTTGCCGGTCAAGGTCTTCACAAAAATTTGCATT 13289 >seq2836 Length=35635 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 || ||||| ||| || ||||| ||||| | |||||| | || ||| || | ||| || || Sbjct 31774 GTTGATTCCTTTTGA-ATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGTTGCTTCCC 31832 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || | || ||||||||||||||||| ||||| |||||||| Sbjct 31833 TGCAAAGATGAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTATCTTG 31880 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| || | |||||||| | ||| || ||||| || || || || | Sbjct 31970 TTCCACCACGAAGCCTGAGAACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGG 32029 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| |||| ||| || | |||||||||||||| |||| || ||||| || || | Sbjct 32030 CCAAAGTCCTGCCATCCTCGAGCTGTTTTCCAGCAAATATCAGCCTCTGCTGGTCGGGTG 32089 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| ||||| || Sbjct 32090 GAATACCTTCCTTATCCTG 32108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738396857836800