Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq23651 156 9e-33 seq335334 118 2e-21 seq26692 89.7 1e-12 seq58770 86.0 1e-11 seq25376 86.0 1e-11 seq2580 84.2 5e-11 seq1776 84.2 5e-11 >seq23651 Length=24420 Score = 156 bits (172), Expect = 9e-33 Identities = 391/590 (66%), Gaps = 13/590 (2%) Strand=Plus/Plus Query 248824 TTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTG 248883 ||||||| |||||| || || |||| ||||| || || | || |||| | | | Sbjct 17382 TTCTTTGGTTTCAAGACCCTCGAGAGGTCGTACCTGCTGAGGATCAATGGACGGGTAGCA 17441 Query 248884 GAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAG 248943 || ||| ||||||||| ||||||| || |||||||| |||||| ||||| | ||| Sbjct 17442 GAGCGACCACAGCACATGCTGATGCGTGTCGCTGTCGGTATTCACGGCGATGATGTCGAG 17501 Query 248944 AGCGTGCTCGAGACGTACACCGGAATGA--GTGAACGCTGGATGACACATGCCACACCGA 249001 || ||||||| |||| | ||| | ||| | | || || || | || | Sbjct 17502 TCCGCCATCGAGACCTACAACTTGATGTCCGAGAAGACCT--TTACCCACGCTTCGCCTA 17559 Query 249002 CGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 ||||||||||| | || || |||| || || |||||||| | | |||| Sbjct 17560 CGCTCTTCAACTCGGGCACACCCAACCCACAACTTTCGTCGTGCTTCTTGGTCTGCATGA 17619 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTA 249118 | ||||||||| |||| || || || |||||||| | ||||| || | ||| || | Sbjct 17620 AGGACGACTCTATCGAGGGAATCTACGACACGCTGA---AGACGTGTGCCATGATCTCCA 17676 Query 249119 AATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCA 249178 | || || || ||||||||| | || |||||||||||| | || || |||||| Sbjct 17677 AGACGGCCGGAGGTATCGGTCTCAACATCCACAACATCCGAGCTACCGGATCATACATCG 17736 Query 249179 AAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCG 249238 ||| || || || ||| | |||||||||||| | || ||| | | ||| | Sbjct 17737 CAGGAACCAACGGTGTCTCCAACGGTATCGTACCCATGCTGCGAGTGTACAACAACACTG 17796 Query 249239 CCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAG 249295 | | | || |||||| || | || || | || ||||| || | || Sbjct 17797 CTCGCTATGTCGACCAGGGAGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGC 17856 Query 249296 TGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCA 249355 |||||| | || || || |||||||||||| || |||||| |||| || ||| Sbjct 17857 CCTGGCACTCGGACATCTTTGAGTTCCTGGACCTGCGCAAGAACCACGGAAAGGAGGAGG 17916 Query 249356 TGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 | |||| ||||| |||||||||| ||| ||| || | ||| |||| ||| Sbjct 17917 TCCGAGCTCGTGAGCTCTTCTACGCCCTCTGGATCCCTGACCTGTTTATG 17966 >seq335334 Length=149 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357 |||||||||||||| || || |||||||||||||| |||||| ||||||| ||| ||| Sbjct 142 TGGCACGCCGATATTTTCGAATTCCTGGACTTGAAGAAGAACCACGGCAAGGAGGAAATG 83 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 | || || ||| | || |||| ||| ||| |||||||||||||| ||||| | Sbjct 82 CGCGCCCGCGACTTGTTTTACGCCCTCTGGACGCCCGACTTGTTCATGAAGCGCGTGGAA 23 Query 249418 GCCGACGGCGATTGGACGCT 249437 ||| ||||||| |||||||| Sbjct 22 GCCAACGGCGACTGGACGCT 3 >seq26692 Length=44863 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 115381 TCAACTTTCGAAAACCTTAATATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTG 115440 ||||||| | | | ||| || |||||||| | ||||||||||| || ||||| ||| || Sbjct 25064 TCAACTTCCCATA-CCTCAAAATCGCACAACGACTCTGAATCGGATCAATGATCTTGTTG 25006 Query 115441 GAGTTGTTGCAGACTATGATGAACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGC 115500 | |||||| | | | ||| ||||| || ||||||||| ||||| | |||| Sbjct 25005 CTCTGGTTGCAAGCAAAGCAGAAGCGCGTTGTATTCGAGTAAATTTCCATTGTACGTCTG 24946 Query 115501 AGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 || ||||| ||| || ||||| ||||| || |||||||| | || ||||| Sbjct 24945 AGAGCCTGCTGAGCGCCCACGGTCATGGAGTCGGCTTCGTCGAGGATGATGATCTT 24890 >seq58770 Length=9062 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 249003 GCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 |||||||||||||||||| | ||| | ||| || || ||||| | |||||||| Sbjct 6751 GCTCTTCAACGCCGGTACTCCTCACCC-TCAATTGTCTTCTTGCTTCTTGGTTGCCATGA 6693 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG-GCGAAGATTTCTAAA 249120 |||||||||| | || || || || || || ||| || | | | |||| ||| || || Sbjct 6692 AAGACGACTCGATAGAGGGAATCTACGATAC-CTTGAAGACATGTGCGATGATCTCCAAG 6634 Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180 ||| || ||||||||||| | | |||||| ||||| |||||| || ||| Sbjct 6633 ACCGCCGGTGGAATCGGTCTTAACATTCACAACATTCGAGCCAAGGGTAGTTATATCGCC 6574 Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCC 249213 || || || || |||| | || ||||||||| Sbjct 6573 GGAACGAACGGTTACAGTAACGGAATCGTACCC 6541 >seq25376 Length=12287 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/146 (75%), Gaps = 8/146 (5%) Strand=Plus/Minus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 ||||| | || || |||||||| || || ||||| ||||| | || |||| |||||| Sbjct 10228 TACTCTCCGACCCTCTTCTCAAAGAAATTAGTCTTACCCTGCAACGAGATCAGCTCCATC 10169 Query 157319 CACTCGAATGGGTTG-GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTC---AGCCA 157374 || || || ||||| | ||| |||||||||||| ||||||| ||| | | |||| Sbjct 10168 CAATCAAACGGGTTCCGAGCA-TTGTACACCTTGCCGTACCCTAGCGCGCCCAAGAGCC- 10111 Query 157375 GTAGTCCGCCACAAACTTGATGTACT 157400 || || |||||||||| |||||||| Sbjct 10110 -TA-TCAGCCACAAACTCGATGTACT 10087 >seq2580 Length=28588 Score = 84.2 bits (92), Expect = 5e-11 Identities = 110/147 (75%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || || |||||||| || || ||||| ||||| | || |||| ||||| Sbjct 12350 GTACTCTCCGACCCTTTTCTCAAAGAAATTAGTCTTACCCTGCAACGAGATCAGCTCCAT 12291 Query 157318 CCACTCGAATGGGTTG-GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTC---AGCC 157373 ||| || || ||||| | ||| |||||||||||| ||||||| ||| | | |||| Sbjct 12290 CCAATCAAACGGGTTCCGAGCA-TTGTACACCTTGCCGTACCCTAGCGCGCCCAAGAGCC 12232 Query 157374 AGTAGTCCGCCACAAACTTGATGTACT 157400 || || |||||||||| ||| |||| Sbjct 12231 --TA-TCAGCCACAAACTCGATATACT 12208 >seq1776 Length=16993 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || |||| |||| |||||||| || |||| |||||||| | || Sbjct 8322 CAGAGATTTTGACTATGATTATTTTGGCTTCAAAACCCTTGAGAGGTCGTATCTTTTAAA 8263 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||||| ||| | ||||| | ||||||||||| ||| | || ||||| || || Sbjct 8262 GGTCGATGGGAAGGTTTTGGAAAGGCCGCAGCACATGTTAATGAGGGTTGCTGTTGGTAT 8203 Query 248925 TCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGAT 248984 || || |||||||| || || || |||| ||| ||| | | | |||| | Sbjct 8202 CCATAAAGATGACATTGACTCTGTTCTGAAGACATACCATTTGATGTCTCAGCACTGGTT 8143 Query 248985 GACACATGCCACACCGACGCTCTT 249008 || |||||||| || || || || Sbjct 8142 CACTCATGCCACCCCTACCCTTTT 8119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1066173356534720