Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq41724 116 7e-21 seq23651 93.3 8e-14 >seq41724 Length=31058 Score = 116 bits (128), Expect = 7e-21 Identities = 289/434 (67%), Gaps = 5/434 (1%) Strand=Plus/Plus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| ||||| || || || || |||||||| || | || || || || |||||| Sbjct 25078 TTGCATTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGATCCTTTGCCTCGATCTTCTGGC 25137 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 ||||||| | ||| | ||||||||||||||| |||||| ||| |||| ||| | |||| Sbjct 25138 TCAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACG 25197 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCAT 102098 | ||||| || ||||||||| ||| |||| || | | | | || | || Sbjct 25198 AGGGTCTGCACACCGACTTTGCCTGCCTGCTCTTCAGCCA-CCTGAAGAAGAGGGCACAC 25256 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 | ||| | | | || | || ||||||| ||||| | || ||||| | || || | Sbjct 25257 CCAGACACTG--TCCTGGCCATCATCACTGAGGCCGTTGGCATCGAACAGGCCTTCCTGA 25314 Query 102159 CAGTTTCCCTGCC-TGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 | | | | ||||| || | | | | || |||||| ||| ||||| |||| ||||| Sbjct 25315 CCGATGCTCTGCCTTGCTCCCTCA-TCGGTATGAACGCTAAGCTGATGTGCCAATACATC 25373 Query 102218 GAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACC 102277 || | || || || ||| | || | || || |||||||| |||| ||| Sbjct 25374 GAGTACGTCGCCGACCGACTGCTCGTCTCCCTCGGCAACGAGAAGCACTACAATGCCACC 25433 Query 102278 AACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAG 102337 |||||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 25434 AACCCCTTTGACTTTATGGAGAACATCAGTCTGCAGGGCAAGACGAACTTCTTCGAGAAG 25493 Query 102338 AGAGTCGCCGAGTA 102351 | ||||| ||||| Sbjct 25494 AAGGTCGCAGAGTA 25507 >seq23651 Length=24420 Score = 93.3 bits (102), Expect = 8e-14 Identities = 173/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| ||||| || ||||||||||| || || | ||| || || || || || ||| Sbjct 17695 CCGATACCTCCGGCCGTCTTGGAGATCATGGCACACGTCTTCAGCGTGTCGTAGATTCCC 17636 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT 94905 || || || || | | || | | ||||||||| |||||||| || || ||| Sbjct 17635 TCGATAGAGTCGTCCTTCATGCAGACCAAGAAGCACGACGAAAGTTGTGGGTTGGGTGTG 17576 Query 94906 CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATAT 94965 || | || || || || || ||||| |||||||| | | ||||| | | || Sbjct 17575 CCCGAGTTGAAGAGCGTAGGCGAAGCGTGGGTAAAGGTCTTCTCGGACATCAAGTTGTAG 17516 Query 94966 GTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATG 95025 || || ||| | || | || || |||||||| |||||||| |||||||| | |||| Sbjct 17515 GTCTCGATGGCGGACTCGACATCATCGCCGTGAATACCGACAGCGACACGCATCAGCATG 17456 Query 95026 TCCTGAGGGCGCTC 95039 | ||| || ||||| Sbjct 17455 TGCTGTGGTCGCTC 17442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982586244878825