Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq507837 120 4e-22 seq25376 111 2e-19 seq2580 111 2e-19 seq537914 107 2e-18 seq41724 104 3e-17 seq370110 100 4e-16 seq1776 93.3 5e-14 seq58770 86.0 8e-12 seq531702 82.4 1e-10 >seq507837 Length=291 Score = 120 bits (132), Expect = 4e-22 Identities = 188/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | ||||| || |||| | | ||||| ||||| ||||||||||| ||| Sbjct 278 GGGCACATGAGAGACCAGTCACCGTTCTGTTCGACTCGCTTCATGAAGAGATCAGGGATC 219 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || || || |||| | || ||| || ||||| ||||| | ||| Sbjct 218 CAGAGGGCGTAGAAGAGTTCTCGAGCTCGGACTTCTTCCTTTCCGTGGTTCTTCCTGAGA 159 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | || || || ||||| || || | ||| ||||| | | || || Sbjct 158 TCGAGGAACTCGAAGATGTCCGAGTGCCATGGCTCGACGTAGATGGCAAAGGCACCTGGT 99 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || || || || | ||||| ||| ||||| || || |||| | ||| || Sbjct 98 CGCTTGTTACCACCTTGGTCGACGTATCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGT 39 Query 63474 ATAATACCGTTTGATATACCATTGGTACC 63502 | ||| ||||| || | ||||||||| || Sbjct 38 ACAATTCCGTTGGAGACACCATTGGTTCC 10 >seq25376 Length=12287 Score = 111 bits (122), Expect = 2e-19 Identities = 372/578 (64%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || |||||||||| || | ||| || || ||||| | Sbjct 9943 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 9884 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||| || |||||||| ||||||||||| || ||| || || |||||| Sbjct 9883 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGAGCAGAAACTCCCCGAGAAGAAG 9824 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || ||| ||||||| | | ||| || | ||| || ||| Sbjct 9823 ATCCCCTCGACGCAAGCGAAGGCAACGATCCGCTCCGCAAAGGTCTCGGAGCCGTC---G 9767 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| | ||||| || || ||||| | || || || || | Sbjct 9766 ATCCAGCGGAGGGCCCACTGAGCCTTTTTGGCCACGCAAGGGACGGTCTCGATTGCGTGG 9707 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || ||| || || ||| || | || || || | ||| || || ||||| Sbjct 9706 AACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTACATC 9647 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| |||||||| ||||| || || ||||| | || |||| | | Sbjct 9646 TCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCGCGTGCTTCGGCGACC 9587 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | || || | | | || || || || || || ||| || Sbjct 9586 TGGACCTCCTTCATGAAGCGGCCGCCCAGGTTCTCCAAAACGATGCCGTCGGAGGCGGCG 9527 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058 || || || | || || | || || | ||||| || ||||| || | ||| | Sbjct 9526 AAGAAGGCGAGCACGTGGGTGATGAAGTGGCGCTCGTCGGGGGTTAGGTTTTCCCAGTGG 9467 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 34118 || || | || | ||| || || ||| | ||||| || || ||||| ||||| || Sbjct 9466 CGGAGGTCCTGGGAGAGATCAACCTCCTCCGCGGTCCAGAAGGAAGCCTCGGCCTTCTTG 9407 Query 34119 TACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 ||||| | |||||| || | || ||||| ||||| || Sbjct 9406 TACATTTCCCAGATCTCCGGGTACTGGATCGGGAACAT 9369 >seq2580 Length=28588 Score = 111 bits (122), Expect = 2e-19 Identities = 233/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || |||||||||| || | ||| || || ||||| | Sbjct 12064 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 12005 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||| || |||||||| ||||||||||| || ||| || || |||||| Sbjct 12004 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGAGCAGAAACTCCCCGAGAAGAAG 11945 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATG 33757 || || || || ||| || ||||||| | | ||| || | || ||| || ||| Sbjct 11944 ATCCCCTCGAC-GCACGCGAAGGCAACGATCCGCTCCGCAAAGGACTCGGAGC---CATC 11889 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | ||||| | |||||||| || ||||| || || || || || | Sbjct 11888 GATCCAGCGGAGGGCCCACTGCGCCTTCTTGGCCACGCAAGGGATGGTCTCGATCGCGTG 11829 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || || ||| || || ||| || | || || || | ||| || || ||||| Sbjct 11828 GAACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTACAT 11769 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 || || || ||||| |||||||| ||||| || || ||||| Sbjct 11768 CTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAA 11727 >seq537914 Length=527 Score = 107 bits (118), Expect = 2e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||||||| || || ||||| || ||| | | || Sbjct 272 AGTTCCGGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCACCGTTGAGACATCATATG 213 Query 63722 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | ||||| || || ||||| | ||| |||||||| || | || | ||| | Sbjct 212 GTATGTTTTGATAGCAGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATCA 154 Query 63781 ACATGTGCTGAGGTCTTTCAACAA--TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 ||||||| ||||| ||||| |||| ||| ||| | ||||| | ||| || | || Sbjct 153 ACATGTGTTGAGGCCTTTCTACAACCTTTCCTTG--GACCTTCAATAGGTAAGACCTCTC 96 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | ||||| |||||||| || | || ||||||||| || || || || Sbjct 95 AAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 45 >seq41724 Length=31058 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||||||||||||| | | || | ||||| || || ||||| Sbjct 25222 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 25163 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || || || || || ||||| || |||||| Sbjct 25162 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGATCCCGAGAAGAAG 25103 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 || || || || || ||||| ||||| |||| ||| Sbjct 25102 ATACCCTCGACGGCGGCAAATGCAATGAGTCGCTC 25068 >seq370110 Length=160 Score = 100 bits (110), Expect = 4e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || ||||| || ||||| ||||||||||| || ||||| || ||||| ||||| ||| Sbjct 159 GAGAAGGTGAGACCCGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAT 100 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33732 || || |||||||||||||| || ||||| || |||| |||| Sbjct 99 CCCGAGAAGAAGATTCCTTCGACGGCAGCGAAAGCAACGAGTC 57 >seq1776 Length=16993 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63166 TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGAC 63225 |||||||||| | ||||| ||| || || ||||||||| || |||| | ||| Sbjct 7140 TTTCGTATAGGATGTACAACTTTTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 7199 Query 63226 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63285 |||| || || | ||| ||||| | || ||| | | |||| || |||||| |||| Sbjct 7200 CCTCATTTGGGCAAAACAAAGACCAATGCCCATCACCTTGGACTCTTTCCATAAAAAGAT 7259 Query 63286 CAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 |||| ||||||||||| | ||||||||||| | || ||| || || Sbjct 7260 CAGGTATCCAAAGAGCAAAAAATAGATCTCGAGCTCGATGCTCTTC 7305 >seq58770 Length=9062 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || |||||||| || || || ||||| ||||||||||| || ||||||||||| Sbjct 7217 TTCTTGGTCTCCTTGTGGAGGTTAGAAATGGCAATTCTGGCGGCAAGGATGGCATAATCG 7276 Query 64077 GGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135 || || | || || ||||| ||| || | ||||| || || |||| | ||| || || Sbjct 7277 GGGTGCTTCGTGGT-CAAGTAGGCGGCGGTCTCGGCAGCAAGGTTGTCAAGTTCCACGGT 7335 Query 64136 TGTTACTCC 64144 |||||||| Sbjct 7336 CGTTACTCC 7344 >seq531702 Length=428 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 |||||||| ||| ||| |||||| || || || || |||||| || |||| | Sbjct 204 TCTCTTTCATATTGAGAGTACAATTTCTCAAATTCTTCACCCCAACAATCTGCCAAACCT 263 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||| | ||| ||||| | ||| ||||| ||||| | | | |||| || ||| ||| Sbjct 264 GGAGACTCACTAGGACAAAACAATGACCATTCTCCATTACTTTGGACTCTTTCCATGAAG 323 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 |||||||| | ||||||||| ||||||||| | || | || ||||| Sbjct 324 AGATCAGGCACCCAAAGAGCATAAAATAGATCCCGTGCACGATTCTCCTC 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625472527741200