Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4858 109 5e-19 seq19785 100 3e-16 seq23076 96.9 3e-15 seq418028 91.5 1e-13 seq2836 86.0 6e-12 >seq4858 Length=21104 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 11664 GCCGCCACGGAGACGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 11605 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||| ||||| || || || |||| || || |||||||||||||| Sbjct 11604 GAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGATCGGGAGG 11545 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| || |||| | || | ||||||| | ||| || Sbjct 11544 GATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTATCGATGGTGTCGGAGCTCTCGAC 11485 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| ||||| | ||||| ||||| || ||||| Sbjct 11484 CTCGAGGGTTATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCAT 11437 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||||||| | |||| | ||| || | || || ||| Sbjct 11861 GTCGACTCCTTCTGAATGTTATAATCGGCGAGCGTGCGCCCGTCCTCCAATTGCTTCCCA 11802 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| || |||||||| ||||| |||||||| ||||| ||| || || Sbjct 11801 GCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 11742 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||| ||||| | || | ||||| ||||| | ||| Sbjct 11741 ACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTT 11682 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 11681 TTGACGAAGATCTGCAT 11665 >seq19785 Length=119778 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||||| |||| ||| | ||| | || ||||| || || ||||| || || Sbjct 21610 CCTCCTCGTAGCCGCAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 21669 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||||||| || || ||| ||||||| || ||||||||||| || Sbjct 21670 AGGGTCCGACCGTCTTCGAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCGGGTGGG 21729 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | |||||| || ||| ||| Sbjct 21730 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCACTGCTCTCGACC 21789 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||| |||| || || ||||| || |||||| Sbjct 21790 TCGAGAGTGATCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 21837 >seq23076 Length=20243 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | ||| | ||| | || ||||| || |||||||| || ||| Sbjct 11923 TGACCACCACGCAGACGGAGAACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCG 11864 Query 139595 CTCATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 139652 | || |||| ||| || ||||| ||||||||| |||||| || ||||| || | Sbjct 11863 GAGAGGGT--TCGACCGTCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAG 11806 Query 139653 GAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGC 139711 |||| ||||| || ||||| ||| | || | || | | || | ||||||| | | Sbjct 11805 GAGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTGACATTGTCGATGGTGTCGGAAGAC 11747 Query 139712 TCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| | || | ||||||||||| | ||| || ||||| || ||||| Sbjct 11746 TCGACCTCGAGAGTAATGGTCTTGCCGGTGAGCGTCTTAACGAAGATCTGCAT 11694 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | ||| | || ||| || || ||||| ||||| | Sbjct 11464 CCACCTCGCAGACGGAGAACGAGGTGCAAGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 11405 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || |||||| ||||||| |||||||||||||| || Sbjct 11404 AGGGTACGTCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCGTTGCTGATCGGGTGGG 11345 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || || | | || | ||||| | || ||| || Sbjct 11344 ATACCCTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCTACT 11285 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||||||| || || || || || |||||| Sbjct 11284 TCCAGAGTAATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCATA 11237 >seq418028 Length=182 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| ||||| || || || |||| || || |||||||||||||| ||||||||||| Sbjct 30 GTCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGATCGGGAGGGATGCCTTCTTT 89 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || |||| | || | ||||||| | ||| ||||| | ||| | Sbjct 90 GTCCTGGATCTTGGCCTTTACGTTATCGATGGTGTCGGAGCTCTCGACCTCGAGGGTTAT 149 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTG 139761 ||||| ||||| | ||||| ||||| || || Sbjct 150 GGTCTTACCGGTTAGGGTTTTCACGAAGATCTG 182 >seq2836 Length=35635 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || |||| || |||||||| || ||||| || ||| || || || || || Sbjct 31989 AACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTCCTGCCATCCTC 32048 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| |||||| | ||||| | ||||| ||||| || || ||||| || || | Sbjct 32049 GAGCTGTTTTCCAGCAAATATCAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTATC-CT 32107 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||||| || | | || | ||| || | | ||| || || | || | |||| Sbjct 32108 GAATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTCTCAACTTCGAGAGTAATAGTCT 32167 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || || || |||||||| Sbjct 32168 TGCCAGTAAGAGTCTTAACAAAGATTTGCAT 32198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492641685468000