Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq25376 134 2e-26 seq2580 125 1e-23 seq41724 114 2e-20 seq537914 113 6e-20 seq507837 111 2e-19 seq1776 100 4e-16 seq370110 93.3 6e-14 seq531702 89.7 7e-13 >seq25376 Length=12287 Score = 134 bits (148), Expect = 2e-26 Identities = 377/576 (65%), Gaps = 2/576 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||||| || ||||| ||||| ||||| | Sbjct 9943 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 9884 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||||| || |||||||| ||||||||||| || ||| || ||| || ||||| Sbjct 9883 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGA-GCAGAAACTCCCCGAGAAGAA 9825 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 ||| || || || || |||||||| | | ||| || | | || | | | || Sbjct 9824 GATCCCCTCGACGCAAGCGAAGGCAACGATCCGCTCCGCAAAGGTCTCGGAGCCGTCGAT 9765 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| | ||||| | ||||| || || ||||| | || || || || | || Sbjct 9764 CCAGCGGAGGGCCCACTGAGCCTTTTTGGCCACGCAAGGGACGGTCTCGATTGCGTGGAA 9705 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 || ||| || || ||| || | || || || | ||| || || ||||| || Sbjct 9704 CAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTACATCTC 9645 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || || ||||| |||||||| ||||| || || ||||| | || |||| | ||| Sbjct 9644 GGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCGCGTGCTTCGGCGACCTG 9585 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 || || | || || | | | || || || || ||||| ||| || || Sbjct 9584 GACCTCCTTCATGAAGCGGCCGCCCAGGTTCTCCAAAACGATGCCGTCGGAGGCGGCGAA 9525 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 || || | || || | || || || |||| ||| ||||| || | ||| | Sbjct 9524 GAAGGCGAGCACGTGGGTGATGAAGTGGCGCTCGTCGGGGGTTAGGTTTTCCCAGTGGCG 9465 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 || || | || | ||| || || ||| | ||||| || || ||||| ||||| || || Sbjct 9464 GAGGTCCTGGGAGAGATCAACCTCCTCCGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTA 9405 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||| | |||||| || | || ||||| ||||| || Sbjct 9404 CATTTCCCAGATCTCCGGGTACTGGATCGGGAACAT 9369 >seq2580 Length=28588 Score = 125 bits (138), Expect = 1e-23 Identities = 235/341 (69%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||||| || ||||| ||||| ||||| | Sbjct 12064 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 12005 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||||| || |||||||| ||||||||||| || ||| || ||| || ||||| Sbjct 12004 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGA-GCAGAAACTCCCCGAGAAGAA 11946 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGCTGTCATGT 50136 ||| || || || || |||||||| | | ||| || | ||| || | ||| Sbjct 11945 GATCCCCTCGACGCACGCGAAGGCAACGATCCGCTCCGCAAAGGACT--CGGAGCCATCG 11888 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||| | |||||||| || ||||| || || || || || | Sbjct 11887 ATCCAGCGGAGGGCCCACTGCGCCTTCTTGGCCACGCAAGGGATGGTCTCGATCGCGTGG 11828 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || || ||| || || ||| || | || || || | ||| || || ||||| Sbjct 11827 AACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTACATC 11768 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || || || ||||| |||||||| ||||| || || ||||| Sbjct 11767 TCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAA 11727 >seq41724 Length=31058 Score = 114 bits (126), Expect = 2e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||||||||||||| | | || || |||||||| || ||||| Sbjct 25222 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 25163 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || ||||| || ||||| || || || ||||| || || || |||||| Sbjct 25162 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGATCCCGAGAAGAAG 25103 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 || || || || |||||||| |||| |||| ||| || | ||||| Sbjct 25102 ATACCCTCGACGGCGGCAAATGCAATGAGTCGCTCGGCAAAGGTGGCG 25055 >seq537914 Length=527 Score = 113 bits (124), Expect = 6e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| |||||||| | |||||||||||| || || ||||| || ||||| | || Sbjct 272 AGTTCCGGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCACCGTTGAGACATCATATG 213 Query 80394 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | ||||| || || ||||| | ||| |||||||| || | || | ||| | Sbjct 212 GTATGTTTTGATAGCAGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATCA 154 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||| ||||| ||||| || | ||| | | ||||| | |||||| | || | Sbjct 153 ACATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAAGACCTCTCAA 94 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| |||||||| || | || ||||||||| || || || || Sbjct 93 GGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 45 >seq507837 Length=291 Score = 111 bits (122), Expect = 2e-19 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATC 79965 || ||||| | ||||| || || | | | ||||| ||||| ||||||||||| ||| Sbjct 278 GGGCACATGAGAGACCAGTCACCGTTCTGTTCGACTCGCTTCATGAAGAGATCAGGGATC 219 Query 79966 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 80025 || || || || || |||| | || || || ||||| ||||| | ||| Sbjct 218 CAGAGGGCGTAGAAGAGTTCTCGAGCTCGGACTTCTTCCTTTCCGTGGTTCTTCCTGAGA 159 Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGT 80085 ||||||||| | | || || || ||||| || || | ||| ||||| | | || ||| Sbjct 158 TCGAGGAACTCGAAGATGTCCGAGTGCCATGGCTCGACGTAGATGGCAAAGGCACCTGGT 99 Query 80086 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 80145 || ||||| || || || || | ||||| ||| ||||| || || |||| | ||| || Sbjct 98 CGCTTGTTACCACCTTGGTCGACGTATCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGT 39 Query 80146 ATAATACCATTGGATGTACCATTGGTCCC 80174 | ||| || ||||| ||||||||| || Sbjct 38 ACAATTCCGTTGGAGACACCATTGGTTCC 10 >seq1776 Length=16993 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | ||| |||| |||| | |||| | ||| |||| ||| || Sbjct 7728 TCCCCCTTGATCAACATAACGAGCAGTGTCATTAAACACTCGAAGCATAGGAACAATGCC 7787 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| | ||||| ||||| | || ||||| || ||||| |||||| || || Sbjct 7788 ATTGGAACTCCCATTTGTCCCACAAATGTAGCTACCTGCTGCACGGATATTATGAACAGA 7847 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 ||||| ||||| || || ||| ||| | || || || || |||||| | || Sbjct 7848 GAGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAGGTATCAAATAT 7907 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 7908 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAGCAGCTA 7950 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 |||||||| | | || || ||| || || ||||||||| ||| | || || ||| Sbjct 7140 TTTCGTATAGGATGTACAACTTTTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 7199 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 || | || || | ||| ||||| | |||||| | | |||| || |||||| |||| Sbjct 7200 CCTCATTTGGGCAAAACAAAGACCAATGCCCATCACCTTGGACTCTTTCCATAAAAAGAT 7259 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||| ||||||||||| | ||||||||||| | || |||||| || Sbjct 7260 CAGGTATCCAAAGAGCAAAAAATAGATCTCGAGCTCGATGCTCTTC 7305 >seq370110 Length=160 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 50007 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 50066 ||| || ||||| || ||||| ||||||||||| || ||||| || ||||| || || || Sbjct 160 GGAGAAGGTGAGACCCGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGA 101 Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 || || |||||||||||||| || || || || ||||| |||| Sbjct 100 TCCCGAGAAGAAGATTCCTTCGACGGCAGCGAAAGCAACGAGTC 57 >seq531702 Length=428 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 |||||||| ||||| | || ||| || || || || |||||| ||| | || || Sbjct 204 TCTCTTTCATATTGAGAGTACAATTTCTCAAATTCTTCACCCCAACAATCTGCCAAACCT 263 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAA 79951 ||| | || |||||| | ||| ||||| ||||||| | |||| |||| || ||| | Sbjct 264 GGAGACTCACTAGGACAAAACAATGACCATTCTCCATTA--CTTTGGACTCTTTCCATGA 321 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||||||||| | ||||||||| ||||||||| | | | || |||||| Sbjct 322 AGAGATCAGGCACCCAAAGAGCATAAAATAGATCCCGTGCACGATTCTCCTC 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713313508440600