Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq544639 98.7 9e-16 seq24333 98.7 9e-16 seq25376 82.4 7e-11 seq2580 82.4 7e-11 >seq544639 Length=747 Score = 98.7 bits (108), Expect = 9e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| |||||||| ||||||||||||||| |||||| || ||||||||||| || Sbjct 268 CAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGAAATAAGCTCATTTGAAAATGTCAAA 209 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 || ||||||| ||| | ||||| | ||| ||||| ||| Sbjct 208 CCCGGCATCATTCCCCTCTTTTTAAGCCAGAATATGGCA 170 >seq24333 Length=53945 Score = 98.7 bits (108), Expect = 9e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| |||||||| ||||||||||||||| |||||| || ||||||||||| || Sbjct 12459 CAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGAAATAAGCTCATTTGAAAATGTCAAA 12400 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 || ||||||| ||| | ||||| | ||| ||||| ||| Sbjct 12399 CCCGGCATCATTCCCCTCTTTTTAAGCCAGAATATGGCA 12361 >seq25376 Length=12287 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| || || || || |||||||| |||| || ||||| || || || || || Sbjct 9943 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 9884 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| || ||||| ||||||| ||||||||||| |||| || ||| || ||||| Sbjct 9883 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTG-AGCAGAAACTCCCCGAGAAGAA 9825 Query 13991 TATTCCCTCAAC 14002 || ||||| || Sbjct 9824 GATCCCCTCGAC 9813 >seq2580 Length=28588 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| || || || || |||||||| |||| || ||||| || || || || || Sbjct 12064 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 12005 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| || ||||| ||||||| ||||||||||| |||| || ||| || ||||| Sbjct 12004 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTG-AGCAGAAACTCCCCGAGAAGAA 11946 Query 13991 TATTCCCTCAAC 14002 || ||||| || Sbjct 11945 GATCCCCTCGAC 11934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476418386511000