Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq23076 89.7 4e-13 seq12300 89.7 4e-13 seq2836 87.8 1e-12 seq10457 82.4 6e-11 >seq23076 Length=20243 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42913 GTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCG 42972 ||||||||||| || | |||||||| |||| |||||| |||| |||| || || || Sbjct 11434 GTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTACGTCCGTCCTCCAGCTGCTTTCCA 11375 Query 42973 GCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTG 43032 ||||| |||| ||| || ||||||| || | ||| || || || |||| | || Sbjct 11374 GCAAAGATCAGTCGTTGCTGATCGGGTGGGATACCCTCCTTATCCTGGATCTTAGCCTTC 11315 Query 43033 ACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTT 43092 || || | | ||||| | ||| || || | || || || || ||||| ||||| Sbjct 11314 ACGTTGTCGATGGTGTCCGAGGACTCTACTTCCAGAGTAATGGTCTTGCCGGTCAGAGTC 11255 Query 43093 TTCACAAAAATTTGCAT 43109 || ||||| || ||||| Sbjct 11254 TTGACAAAGATCTGCAT 11238 >seq12300 Length=44855 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| || | ||||||||| | || ||||||||| | |||||||||| Sbjct 12834 CCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGGCT 12893 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || ||||| || || || ||||||||||| | ||| || || | || Sbjct 12894 AAGGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGGGA 12953 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || |||| | || || || ||| || ||| | ||| || Sbjct 12954 ATACCCTCTTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCAACC 13013 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || | || || ||||| || ||||| Sbjct 13014 TCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 13060 >seq2836 Length=35635 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | || | ||||| || |||||||| | ||||||||| | Sbjct 31743 GCCACCACGCAGGCGGAGAACAAGATGGAGTGTTGATTCCTTTTGAATATTGTAATCAGC 31802 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| | || || | ||| || || ||||| || | | ||| ||||| | || Sbjct 31803 AAGAGTACGGCCATCCTCAAGTTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGAGG 31862 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| ||||||| | ||| ||| ||| ||| ||| | Sbjct 31863 AATCCCTTCCTTATCTTGGATCTTTGCTTTGACATTATCAATTGTATCGG-AGCTCTCCA 31921 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || | || ||||| ||||| || ||||| ||||||||||| |||||| Sbjct 31922 CCTCAAGGGTGATAGTCTTTCCAGTAAGAGTCTTCACAAAAATCTGCATT 31971 >seq10457 Length=19256 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 ||||| |||||||| || ||||| || ||||||||||| ||||| | || | ||||| Sbjct 4045 TCGTCCTCCAATTGCTTCCCGGCGAAGATCAATCGCTGCTGATCCGGAGGGATCCCTTCC 3986 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGT 43070 || || |||| ||||||| || | | |||||| ||| |||||| || | || Sbjct 3985 TTGTCTTGGATCTTGGCTTTGACGTTGTCGATGGTGTCG-GAGCTCTCGACCTCGAGGGT 3927 Query 43071 TATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||||| ||||| || || || ||||| Sbjct 3926 GATGGTCTTCCCGGTTAAGGTTTTGACGAAGATCTGCAT 3888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378804331091070