Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq507837 111 2e-19 seq41724 109 7e-19 seq2580 107 3e-18 seq537914 100 4e-16 seq1776 96.9 5e-15 seq531702 91.5 2e-13 seq370110 89.7 7e-13 >seq507837 Length=291 Score = 111 bits (122), Expect = 2e-19 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || ||||| | ||||| || || | | | ||||| ||||| ||||||||||| ||| Sbjct 278 GGGCACATGAGAGACCAGTCACCGTTCTGTTCGACTCGCTTCATGAAGAGATCAGGGATC 219 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || || || || || |||| | || || || ||||| ||||| | ||| Sbjct 218 CAGAGGGCGTAGAAGAGTTCTCGAGCTCGGACTTCTTCCTTTCCGTGGTTCTTCCTGAGA 159 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 ||||||||| | | || || || ||||| || || | ||| ||||| | | || || Sbjct 158 TCGAGGAACTCGAAGATGTCCGAGTGCCATGGCTCGACGTAGATGGCAAAGGCACCTGGT 99 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || ||||| || || || || | ||||| ||| ||||| || || |||| | ||| || Sbjct 98 CGCTTGTTACCACCTTGGTCGACGTATCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGT 39 Query 72229 ATAATACCATTGGATGCACCATTGGTCCC 72257 | ||| || ||||| |||||||||| || Sbjct 38 ACAATTCCGTTGGAGACACCATTGGTTCC 10 >seq41724 Length=31058 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| |||||||||||| || | | || | |||||||| || ||||| Sbjct 25222 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 25163 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || ||||| || ||||| || || || ||||| ||||| || |||||| Sbjct 25162 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGATCCCGAGAAGAAG 25103 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219 || || || || || ||||| ||||| |||| ||| Sbjct 25102 ATACCCTCGACGGCGGCAAATGCAATGAGTCGCTC 25068 >seq2580 Length=28588 Score = 107 bits (118), Expect = 3e-18 Identities = 232/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || ||||| |||| || | ||| ||||| ||||| | Sbjct 12064 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 12005 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||||| || |||||||| ||||||||||| || ||| || || || ||||| Sbjct 12004 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGA-GCAGAAACTCCCCGAGAAGAA 11946 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC--TGTCATGT 42241 ||| || || || ||| ||||||| | || | |||| || | | | | ||| Sbjct 11945 GATCCCCTCGACGCACGCGAAGGCAACGA-TC-CGCTCCGCAAAGGACTCGGAGCCATCG 11888 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| | ||||| | |||||||| || ||||| || || || || || | Sbjct 11887 ATCCAGCGGAGGGCCCACTGCGCCTTCTTGGCCACGCAAGGGATGGTCTCGATCGCGTGG 11828 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || ||| || || ||| || | || || || | ||| || || ||||| Sbjct 11827 AACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTACATC 11768 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || || || ||||| |||||||| ||||| || || ||||| Sbjct 11767 TCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAA 11727 >seq537914 Length=527 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | |||||||||||| || || ||||| || ||||| | || Sbjct 272 AGTTCCGGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCACCGTTGAGACATCATATG 213 Query 72477 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | ||||| || || ||||| | ||| || ||||| || | || | ||| | Sbjct 212 GTATGTTTTGATAGCAGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATCA 154 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||| || ||||| ||||| || | ||| | | ||||| | ||| || | || | Sbjct 153 ACATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAAGACCTCTCAA 94 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| |||||||| || | || ||||||||| || || || || Sbjct 93 GGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 45 >seq1776 Length=16993 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGAC 71980 |||||||| | | || || ||| || || ||||||||| || | || || ||| Sbjct 7140 TTTCGTATAGGATGTACAACTTTTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 7199 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040 ||||| || || | ||| ||||| | |||||| | | |||| || |||||| |||| Sbjct 7200 CCTCATTTGGGCAAAACAAAGACCAATGCCCATCACCTTGGACTCTTTCCATAAAAAGAT 7259 Query 72041 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||| ||||||||||| | ||||||||||| | || |||||| || Sbjct 7260 CAGGTATCCAAAGAGCAAAAAATAGATCTCGAGCTCGATGCTCTTC 7305 >seq531702 Length=428 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 |||||||| ||||| | || ||| || || || || |||||| || | || || Sbjct 204 TCTCTTTCATATTGAGAGTACAATTTCTCAAATTCTTCACCCCAACAATCTGCCAAACCT 263 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 ||| | ||| | ||||| | ||||||||| ||||||| | | |||| || ||| ||| Sbjct 264 GGAGACTCACTAGGACAAAACAATGACCATTCTCCATTACTTTGGACTCTTTCCATGAAG 323 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||||||| | ||||||||| ||||||||| | | | || |||||| Sbjct 324 AGATCAGGCACCCAAAGAGCATAAAATAGATCCCGTGCACGATTCTCCTC 373 >seq370110 Length=160 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 ||| || ||||| || ||||| ||||||||||| || ||||| || || || || || || Sbjct 160 GGAGAAGGTGAGACCCGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGA 101 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTC 42215 ||| || |||||||||||||| || || || || |||| |||| Sbjct 100 TCCCGAGAAGAAGATTCCTTCGACGGCAGCGAAAGCAACGAGTC 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666509052605400