Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq460352 87.8 2e-12 seq23076 86.0 6e-12 seq19785 82.4 8e-11 >seq460352 Length=212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| || ||||| | |||||||| || || ||||||||||| | Sbjct 13 CCTCCACGCAGACGCAGGACCAAATGCAGAGTAGATTCCTTCTGGATGTTGTAATCAGAC 72 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || ||||| || || || || | ||||||||||||||||||||||| Sbjct 73 AGGGTACGTCCA-TCCTCGAGCTGCTTGCCGGCGAAAATCAGACGTTGCTGATCGGGAGG 131 Query 143077 TATGCCTTCTTTGTC 143091 ||||| || || || Sbjct 132 AATGCCCTCCTTATC 146 >seq23076 Length=20243 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 || || || ||||||||||| || || | ||| || || || || |||||| || Sbjct 11428 TCCTTCTGGATGTTGTAATCCGACAGGGTACGTCCGTCCTCCAGCTGCTTTCCAGCAAAG 11369 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 ||||| |||||||||||||| || || || || || || || || || | | Sbjct 11368 ATCAGTCGTTGCTGATCGGGTGGGATACCCTCCTTATCCTGGATCTTAGCCTTCACGTTG 11309 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | ||||||| || |||||||| | ||| | ||||||||||||| || || || Sbjct 11308 TCGATGGTGTCCGAGGACTCTACTTCCAGAGTAATGGTCTTGCCGGTCAGAGTCTTGACA 11249 Query 143174 AATATTTGCATA 143185 || || |||||| Sbjct 11248 AAGATCTGCATA 11237 >seq19785 Length=119778 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||||| |||| ||| | || | || || || || || |||||||| || Sbjct 21610 CCTCCTCGTAGCCGCAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 21669 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||| || || || ||| ||||||| || ||||||||||| || Sbjct 21670 AGGGTCCGACCGTCTTCGAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCGGGTGGG 21729 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | || | ||||| || || || Sbjct 21730 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCACTGCTCTCGACC 21789 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||||||| |||| || || ||||| || |||||| Sbjct 21790 TCGAGAGTGATCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 21837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503516539342800