Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq41724 201 2e-46 seq2580 132 7e-26 seq25376 127 3e-24 seq23651 95.1 2e-14 seq58770 91.5 2e-13 seq275244 86.0 9e-12 >seq41724 Length=31058 Score = 201 bits (222), Expect = 2e-46 Identities = 584/893 (65%), Gaps = 52/893 (6%) Strand=Plus/Plus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 |||| | || ||| |||||||||| ||||| |||| || || ||||| | ||| ||| Sbjct 24635 ATCAACAGATCTGGCAAATGTACAAGAAGGCAGAGGCTTCTTTCTGGACTGCCGAGGAGA 24694 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAG 125129 |||| ||||||||||| || |||| ||||| || | | || || | || || | Sbjct 24695 TCGACTTGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAC-GACAACGAACGTCAC 24753 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT- 125188 || || || ||| || | |||||||| |||| ||| || || ||||||||||| || || Sbjct 24754 TTCATCTCTCACGTTCTCGCCTTCTTCGCCGCCTCGGACGGTATCGTCAACGAGAACCTC 24813 Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTC 125246 ||||| || |||||| || | ||| | | |||| | ||||| ||||| ||| Sbjct 24814 GTTGA-GCGGTTCTCTTCTGA--AGTCCAGGCCGCTGAGGCGCGATGCTTCTACGGTTTC 24870 Query 125247 CAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306 || |||||||| |||||| | ||||| || | ||||| || ||||||| |||||| Sbjct 24871 CAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACTTACATT 24930 Query 125307 CGCGATCCGCAACGTAAAC-----------------------ACATGCTCTTTAACGCAA 125343 || | | | || || ||||| Sbjct 24931 CGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTCCTTTTCGACGCAG 24990 Query 125344 TCGACACGGT-GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC 125402 |||| || | ||||| | | ||||||| | |||| | || |||||| ||| Sbjct 24991 TCGAGACCATCCCCGTCGTCAAG-CAAAAGGCCGACTGGGCCCTGCGATGGATCAGCGAC 25049 Query 125403 GACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462 | || | | | ||||| |||| | ||||| |||||||| ||||| |||||||| Sbjct 25050 AAGAACGCCACCTTTGCCGAGCGACTCATTGCATTTGCCGCCGTCGAGGGTATCTTCTTC 25109 Query 125463 TCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 ||||| ||||| | ||||| |||||||||||||| || |||||||| || || || Sbjct 25110 TCGGGATCCTTTGCCTCGATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTCACC 25169 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582 | |||||| | || ||||| |||||||| || ||| ||||||||| || || Sbjct 25170 TTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTC 25229 Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 || || | | ||| ||| ||| | ||| || | ||| | ||| | Sbjct 25230 TT---CAGCCACCTG-AAGAAGAGGGCACACCCA-----GACACTGTCCTGGCCATCATC 25280 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702 || || ||||| | || ||||| | || || ||||| | || || | | | || Sbjct 25281 ACTGAGGCCGTTGGCATCGAACAGGCCTTCCTGACCGATGCTCTGCCTTGCTCCCTCATC 25340 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 || |||||| ||||| |||||| | ||||| |||| || || || || |||| | Sbjct 25341 GGTATGAACGCTAAGCTGATGTGCCAATACATCGAGTACGTCGCCGACCG---ACTGCTC 25397 Query 125763 GAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 | | | ||| || ||| ||||| |||| || |||||||| || ||| || Sbjct 25398 GTCTCCCTCGGCAACGAGAAGCACTACAATGCCACCAACCCCTTTGACTTTATG--GAGA 25455 Query 125820 ATATCA--CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | |||| || |||| ||||| ||||| ||||||||||||||| |||||| Sbjct 25456 ACATCAGTCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTCGCAGAGTAC 25508 >seq2580 Length=28588 Score = 132 bits (146), Expect = 7e-26 Identities = 577/893 (65%), Gaps = 51/893 (6%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | || || |||||||||||||| ||||| |||||||||| | Sbjct 11491 TGTTCCCGATCCAGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCT 11550 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || ||| |||||| | ||||||| | | |||| Sbjct 11551 GGACCGCCGAGGAGGTCGACCTCTCCCAGGACCAGCGTCATTGGGAAGCCC---TGACCC 11607 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 ||||| | || || | ||| | | |||||||| |||| |||||| || |||| Sbjct 11608 CCGACGAGCGCCACTTCATCACCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 11667 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTG 125233 | || || ||| || ||| | ||| | | ||| | | || | || | Sbjct 11668 TTTTGGAGAACCTGGGCGGCCGCTTC-ATGAAG-GAGGTCCAGGTCGCCGAAG-CACGCG 11724 Query 125234 -CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA----CTCTACA 125288 ||| || || ||||| ||| ||||||||| | ||||| || ||||| |||| Sbjct 11725 CCTTCTATGGCTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCT--- 11781 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || |||| | ||||| ||| || || || || || |||| ||||| Sbjct 11782 -TGCTTGAGACCTACATCAAGGATTCGGTCGAGAAGAACCGCCTGTTCCACGCGATCGAG 11840 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || | || | | || ||||| || |||| | || |||||||||| | | || Sbjct 11841 ACCATCCCTTGCGTGGCCAAGAAGGCGCAGTGGGCCCTCCGCTGGATCGATGGCTCCGAG 11900 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 || | || || | | || || ||||| ||| ||||| |||||||| ||||| Sbjct 11901 ---TCCTTTGCGGAGCGGATCGTTGCCTTCGCGTGCGTCGAGGGGATCTTCTTCTCGGGG 11957 Query 125469 AGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 ||||| ||| | || |||||||| || ||||| || | ||||| || ||||| | Sbjct 11958 AGTTTCTGC-TCAATATTTTGGCTAAAAAAGCGAGGGTTAATGCCTGGCTTGACGTTCTC 12016 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT----TGCC-ATTCTACT- 125581 || || | || || |||||||||||||| ||||| ||||| |||| | |||||| Sbjct 12017 CAATGAACTGATCTCGCGAGACGAGGGCCTCCACTGCGACTTCGCGTGCCTACTCTACTC 12076 Query 125582 GTTTC---GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 | ||| | || | ||| | |||| || | ||| |||| || || Sbjct 12077 GCTTCTAAGGAAGAAGCTGAG---CGAG----GAGC--GCG-TGAAGGGG--------AT 12118 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCAT 125698 || ||| || ||| || || | |||||| | ||| | || ||| | | Sbjct 12119 CGTCCGCGACGCGGTGGACATCGAGAAGGAGTTTGTTTGCGACGCGCTGCCGTGCGCGCT 12178 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 | | || |||||| | | |||||| || |||| || ||||||||||| ||| | || | Sbjct 12179 GGTGGGGATGAACGGGGACCTAATGAGCCAGTATATCGAGTTTGTGGCTGATAGGCTCTT 12238 Query 125759 GTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCA 125817 | || | | | ||||| | ||||| || ||| || ||||||| || || | Sbjct 12239 GGGCGCGCTAGGGTACGGCAAGGTGTACAATGCTCGGAACCCGTTTGATTGGATGGAGCT 12298 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || | |||||||||| || || || ||||| | |||| | |||||| Sbjct 12299 G-ATCTCGTTGCAGGGTAAGACTAATTTCTTTGAGAAAAGGGTCGGAGAGTAC 12350 >seq25376 Length=12287 Score = 127 bits (140), Expect = 3e-24 Identities = 581/898 (65%), Gaps = 54/898 (6%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | || || |||||||||||||| ||||| |||| ||||| | Sbjct 9370 TGTTCCCGATCCAGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCTTCCTTCT 9429 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | || ||||| ||||| ||| ||||||| | | ||||| | | | | Sbjct 9430 GGACCGCGGAGGAGGTTGATCTCTCCCAGGACCTCCGCCACTGGGAAAACCTAACCCCCG 9489 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || || | ||| | | |||||||| |||| |||||| || |||| Sbjct 9490 AC---GAGCGCCACTTCATCACCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 9546 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTG 125233 | || || ||| || ||| | ||| | ||| || | || | || | Sbjct 9547 TTTTGGAGAACCTGGGCGGCCGCTTCATGAAGGAGGT--CCAGGTCGCCGAAGCA-CGCG 9603 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTAC----TCTACA 125288 | || || || ||||| ||| ||||||||| | ||||| || |||||| ||| Sbjct 9604 CCTTCTATGGCTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCT--- 9660 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || |||| | ||||| ||| || || || || || |||||||||| Sbjct 9661 -TGCTTGAGACCTACATCAAGGATTCGGTCGAGAAGAACCGCCTGTTCCACGCAATCGAG 9719 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | | ||||||||||| |||| | || |||||||| | | | || Sbjct 9720 ACCGTCCCTTGCGTGGCCAAAAAGGCTCAGTGGGCCCTCCGCTGGATCGACGGCTCCGAG 9779 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | | || || | | || || ||||| ||| ||||| |||||||| ||||| Sbjct 9780 ACCTTT---GCGGAGCGGATCGTTGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCGGGG 9836 Query 125469 AGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 ||||| ||| | || |||||||| || ||||| || | ||||| || ||||| | Sbjct 9837 AGTTTCTGCT-CAATATTTTGGCTAAAAAAGCGAGGGTTAATGCCTGGCTTGACGTTCTC 9895 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT----TGCC-ATTCTACT- 125581 || || | || || |||||||||||||| ||||| ||||| |||| | |||||| Sbjct 9896 CAATGAACTGATCTCGCGAGACGAGGGCCTCCACTGCGACTTCGCGTGCCTACTCTACTC 9955 Query 125582 GTTTC---GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 | ||| | || | ||| | |||| || | ||| |||| || || Sbjct 9956 GCTTCTAAGGAAGAAGCTGAG---CGAG----GAGC--GCG-TGAAGGGG--------AT 9997 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCA- 125697 || ||| || ||| || || | ||||| | || | || || || ||| Sbjct 9998 CGTGCGCGACGCGGTGGAAATCGAGAAGGAGTTCGTGTGTGACGCGCTGCC-GTGCGCAT 10056 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 || | || |||||| | | || ||| || ||||||| ||||||||||| ||| | || Sbjct 10057 TGGTGGGGATGAACGGGGACCTTATGAGCCAGTACATCGAGTTTGTGGCTGATAGGCTCT 10116 Query 125758 TGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACC 125816 || || | | | ||||| | ||||| || ||| || ||||||| || || | Sbjct 10117 TGGGCGCGCTAGGGTACGGCAAGGTGTACAATGCTCGGAACCCGTTTGATTGGATGGAGC 10176 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA-CAAA 125873 | || || | |||||||||| || || || ||||||| |||| | ||||| |||| Sbjct 10177 TG-ATCTCGTTGCAGGGTAAGACTAATTTCTTTGAGAAGAGGGTCGGAGAGTATCAAA 10233 >seq23651 Length=24420 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 ||||||||||||||||||||||| || ||||| | ||||| |||||||||||| | | Sbjct 18988 TCTACAAGACTGTCTGGGAGATTTCGCAGAAGACCATCATCGACATGGCTGCCGACCGTG 19047 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 ||| || || || || ||| |||| | || || | | ||||||| ||| Sbjct 19048 GTGCCTTTATCTGTCAATCACAGTCGCTCAACATCCACCTTTCGGCTCCCACCTTTGGTC 19107 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 |||| ||||| ||||| |||| ||||| || |||||||| || || ||||| | Sbjct 19108 AGCTGACCTCGATGCACTTCTACGGCTGGAAGCGAGGACTCAAGACTGGTATCTACTACC 19167 Query 98218 TG 98219 || Sbjct 19168 TG 19169 >seq58770 Length=9062 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/193 (72%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGAC-CAAGACGCTGATCGATATGGCTGCCGACAG 98095 ||||||||||| |||||||||| || | | ||| | | ||||| | |||||||| | Sbjct 5070 ATCTACAAGACCGTCTGGGAGA-TCAGTCAGAAGGCTGTCATCGACCTCGCTGCCGATCG 5012 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACC----T 98151 |||| || || |||||| ||| || || || | || | || | || || Sbjct 5011 TGGTGCCTTTATCGACCAGTCTCAGTCCTTGAACGTTCACTTGACCAACCCTTCCATGGG 4952 Query 98152 ACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGT 98211 ||||| ||||||| || |||||||||| ||||| ||||| |||||||| || |||| Sbjct 4951 ACAGT----TGACTTCCATGCACTTTTACGGGTGGAAGAAGGGTCTCAAGACTGGAATGT 4896 Query 98212 ACTATCTGAGAAC 98224 |||| ||||| || Sbjct 4895 ACTACCTGAGGAC 4883 >seq275244 Length=135 Score = 86.0 bits (94), Expect = 9e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 127081 TCAATTTCCTGCTC-TAGTGATTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAG 127139 |||||||| |||| | || ||| ||| | ||||||| || ||||||||||||| || Sbjct 134 TCAATTTCAGGCTCCTTGTCCTTT-CGGAAGAAGATGATACCAGCTCGAGGACCTCGCAG 76 Query 127140 AGTCTTGTGCGTTGTAGTGGTCACAATGTCACAATACTCAAAGGGG 127185 |||||||| || || | ||| ||||||||||| || ||||||||| Sbjct 75 CGTCTTGTGAGTAGTCGAGGTGACAATGTCACAGTATTCAAAGGGG 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735946678895400