Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq12300 113 3e-20 seq2836 98.7 7e-16 >seq12300 Length=44855 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| | || ||||| ||||| || || ||||| |||||||||||| | Sbjct 12834 CCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGGCT 12893 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | || | ||||| || || || ||||| | ||||| | || ||||| ||| Sbjct 12894 AAGGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGGGA 12953 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| || || ||| ||| | || ||||||||| | | || || Sbjct 12954 ATACCCTCTTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCAACC 13013 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||| || |||| || || ||||| || ||||| Sbjct 13014 TCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 13060 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| |||||||||||| || ||| | ||||| Sbjct 13308 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTTCGACCATCTTCG 13367 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| |||||||| | ||||| | || || || ||| || || || || || Sbjct 13368 AGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATACCCTCCTTATCCTGG 13427 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| || | || || || ||||| |||||||| Sbjct 13428 ATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCAACTTCCAAGGTTATGGTTTTC 13487 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||| ||||||||| Sbjct 13488 CCGGTAAGGGTTTTGACAAAGATTTGCATA 13517 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | |||||| || || || || || ||||| |||| | || | |||||| Sbjct 13080 ACCAAGTGCAAGGTGGACTCCTTCTGAATATTATAATCAGCTAGAGTCCTTCCATCTTCT 13139 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | ||||| | || ||||| || || || || || || Sbjct 13140 AGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGGATACCCTCCTTATCTTGG 13199 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| ||| | || |||||||| |||| || || || || || ||||| Sbjct 13200 ATCTTTGC-CTTAACATTATCAATGGTATCAGAGCTTTCAACTTCCAAAGTGATAGTTTT 13258 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || |||||||||||||| Sbjct 13259 GCCGGTCAAGGTCTTCACAAAAATTTGCAT 13288 >seq2836 Length=35635 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | ||| || || |||||||| ||||| || ||||||||||| Sbjct 32656 CCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCAGCC 32715 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | | || || || ||||| ||||| | |||| | || ||||| || Sbjct 32716 AAAGTACGCCCATCCTCCAACTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGG 32775 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| ||||||| || ||| | || || ||||| | || || Sbjct 32776 ATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTATCAATTGTATCAGAGCTCTCGACC 32835 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || |||||||| ||||| || ||||| Sbjct 32836 TCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTGCAT 32882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359743014627015