Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq12300 98.7 8e-16 seq2836 86.0 5e-12 seq30213 84.2 2e-11 seq18120 82.4 6e-11 >seq12300 Length=44855 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| |||||||||||||| |||||||||||||||| ||| | | || || ||||| Sbjct 12401 GTGCAGGGTAGACTCCTTTTGGATATTGTAATCCGCCAGAGTTCTTCCATCTTCAAGCTG 12460 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | ||||| || ||||||||| || | ||||| ||||| ||| || Sbjct 12461 CTTGCCTGCAAATATAAGCCTTTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTT 12520 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | ||||| | ||| || | |||||||| || ||||| Sbjct 12521 TGCTTTCACATTATCAATTGTATCAGAACTCTCAACCTCCAATGTAATGGTCTTCCCTGT 12580 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || || ||||| ||||| Sbjct 12581 CAAGGTCTTCACGAAAATCTGCAT 12604 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || ||||| | | ||||| || | ||||||||||| |||||||||||||| || Sbjct 12606 CCACCCCGCAAGCGCAGCACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCA 12665 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || ||||| || || ||| | ||||| || ||||| || || Sbjct 12666 AGGGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 12725 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||||||||| || ||| || || | | | | |||||| | || Sbjct 12726 ATGCCCTCTTTGTCTTGTATCTTCGCCTTGACATTGTCAATAGTATCCGAACTTTCAACC 12785 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| |||||||| || || ||||| || |||||||| |||||| Sbjct 12786 TCCAAGGTTATGGTTTTTCCCGTCAAAGTCTTCACAAAAATCTGCATT 12833 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || ||||| | | ||||| |||| || ||||||||||| || |||||||| | Sbjct 12832 TTCCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGG 12891 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | || |||| ||| ||||| ||| |||| | |||||||| ||| || Sbjct 12892 CTAAGGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGG 12951 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| || || || || | | | | |||||| | ||| Sbjct 12952 GAATACCCTCTTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCAA 13011 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||||| || || || || || ||||| || ||||| Sbjct 13012 CCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 13060 >seq2836 Length=35635 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 18850 CTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATA 18909 |||||| ||||| |||||||| || | || | | ||||| ||||| || || ||| | Sbjct 31551 CTCCTTCTGAATGTTGTAATCTGCTAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAA 31610 Query 18910 AATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTG 18969 || || |||||||||||| || | ||||| ||||| ||| ||| ||| || | Sbjct 31611 GATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTCGCTTTCACATT 31670 Query 18970 GCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGAC 19029 ||| ||||| | |||| || | || || || || ||||| || ||||| || Sbjct 31671 ATCGATGGTATCAGAACTCTCCACCTCAAGTGTGATCGTCTTTCCTGTCAAGGTTTTCAC 31730 Query 19030 AAAAATTTGCAT 19041 |||||| ||||| Sbjct 31731 AAAAATCTGCAT 31742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| ||||| |||||||| |||| ||| | | ||||| Sbjct 32446 ACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCA 32505 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || |||| || ||||||||||| ||| | || |||||||| | Sbjct 32506 AGCTGCTTTCCAGCGAAAATTAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGA 32565 Query 18953 ATTTT 18957 ||||| Sbjct 32566 ATTTT 32570 >seq30213 Length=64460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| || |||| |||||| ||||||||||| || || ||||| || | Sbjct 40920 TTCCTCCCCTCAACCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGG 40979 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| ||||||| ||||| || || || | || | || ||||||||| || Sbjct 40980 AAAGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGATCAGGGG 41039 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||||| ||||| Sbjct 41040 GAATTCCCTCCTTGTC 41055 >seq18120 Length=99179 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||||||||||| | | ||| | ||| | || |||||||| || || ||||| |||| Sbjct 92593 TCCTCCTCGCAGACGAAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 92534 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | ||| | ||||||| ||||| || || || | || |||| |||||| || ||| Sbjct 92533 AAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCAGGGGG 92474 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | ||||| ||||| || || || || | | | | || ||| || |||| Sbjct 92473 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 92414 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| || || || || || | || |||||||| |||||||| Sbjct 92413 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACAAAGATTTGCAT 92366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411784190959510