Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq12300 91.5 1e-13 seq2836 87.8 1e-12 >seq12300 Length=44855 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || | ||| ||| || |||||||||||||| || | |||| || Sbjct 13079 CACCAAGTGCAAGGTGGACTCCTTCTGAATATTATAATCAGCTAGAGTCCTTCCATCTTC 13138 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | ||| || || ||||| ||||||| ||||||||| | || | ||| || |||||| Sbjct 13139 TAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGGATACCCTCCTTATCTTG 13198 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || ||| || || || ||| ||||| | || || || | || || ||||| Sbjct 13199 GATCTTTGCCTTAACATTATCAATGGTATCAGAGCTTTCAACTTCCAAAGTGATAGTTTT 13258 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || ||||||||||| |||||||| Sbjct 13259 GCCGGTCAAGGTCTTCACAAAAATTTGCAT 13288 >seq2836 Length=35635 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || ||||||||||| ||||| | ||| |||| || | ||| || |||||||| Sbjct 31780 TCCTTTTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGTTGCTTCCCTGCAAAG 31839 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || ||||| ||| |||| | ||||| |||||| || ||| |||||| || Sbjct 31840 ATGAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTATCTTGGATCTTTGCTTTGACATTA 31899 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | |||||| || | || || || || || || | |||||||||| Sbjct 31900 TCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATAGTCTTTCCAGTAAGAGTCTTCACA 31959 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 31960 AAAATCTGCAT 31970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 352391201223420