Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq12300 93.3 4e-14 seq8213 84.2 2e-11 >seq12300 Length=44855 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || || | || ||||||||| || || || || ||||| |||||||||||| Sbjct 12832 TTCCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGG 12891 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | || | ||||||||| || || || ||| |||| | |||||| || || || Sbjct 12892 CTAAGGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGG 12951 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| || || || || | | ||| | |||| | || Sbjct 12952 GAATACCCTCTTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCAA 13011 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||||||||| || ||||| || || ||||| || ||||| Sbjct 13012 CCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 13060 >seq8213 Length=36447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 |||||||| ||||||| | | |||||| || | || ||||| || || ||||| ||| Sbjct 19210 TTTATCATAGTTCCTCCCCTAAGCCTCAAAACTAGGTGAAGTGTCGACTCCTTTTGGATG 19269 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | |||| | |||||||||||| || || ||| |||| || ||||| Sbjct 19270 TTGTAATCAGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGC 19329 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||| ||||| Sbjct 19330 TGGTCTGGAGGGATACCTTCCTTGTC 19355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416764861778115