Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2836 102 7e-17 seq23076 95.1 1e-14 seq4858 84.2 2e-11 seq12300 82.4 6e-11 >seq2836 Length=35635 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || ||||| |||||| |||||||||||||| ||||| ||| | ||||| |||||| Sbjct 32452 TGGAGTGTAGACTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCAAGCTGC 32511 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || |||||| | ||||||||| || | | ||| |||||| |||||| Sbjct 32512 TTTCCAGCGAAAATTAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTT 32571 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | |||||||||| | ||| ||| | || || || || || ||| Sbjct 32572 GCCTTCACATTATCTATGGTATCAGAGCTCTCAACCTCAAGAGTAATAGTCTTTCCAGTG 32631 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||||||||||||| Sbjct 32632 AGTGTCTTGACAAAAATCTGCATC 32655 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||||||||||| |||||||||||||| || | || | ||||| ||||| Sbjct 31539 ATGCAGGGTGCTCTCCTTCTGAATGTTGTAATCTGCTAGGGTGCGGCCATCCTCAAGCTG 31598 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | |||||||||| || | | ||||||||| ||| || Sbjct 31599 CTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTT 31658 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | || | | | |||||||| | | |||| ||| | ||| || || || || || Sbjct 31659 CGCTTTCACATTATCGATGGTATCAGAACTCTCCACCTCAAGTGTGATCGTCTTTCCTGT 31718 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | |||||||||||||||||||| Sbjct 31719 CAAGGTTTTCACAAAAATCTGCAT 31742 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || ||| || || || ||||||||||||||||| ||| | |||||| Sbjct 32674 ACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCAGCCAAAGTACGCCCATCCTCC 32733 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||| || || | | || | | |||||| || || | | ||||||||| | Sbjct 32734 AACTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGA 32793 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| |||| | | || ||||| | ||| ||||| |||||||| || Sbjct 32794 ATTTTGGCTTTGACATTATCAATTGTATCAGAGCTCTCGACCTCGAGAGTTATGGTCTTT 32853 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||||||||| ||||| ||||||||| Sbjct 32854 CCAGTGAGAGTTTTGACAAAGATCTGCATC 32883 >seq23076 Length=20243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || | | ||| ||||||| ||||||||||| | | Sbjct 11885 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCAAGCTGCTTACCAGCAAA 11826 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || |||||||| || || | | ||||||||| ||| || ||||| | Sbjct 11825 GATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATT 11766 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| |||||| ||||| || ||||| || |||||||| || || || Sbjct 11765 GTCGATGGTGTCGGAAGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGCGTCTTAAC 11706 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 11705 GAAGATCTGCAT 11694 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | || || || || || |||||||| ||||||||||| |||| Sbjct 11692 CCTCCCCTCAATCGCAGGACCAAGTGCAGGGTACTCTCCTTCTGAATGTTGTAGTCAGAG 11633 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||||| ||||||||| || |||| | ||||||||| || || Sbjct 11632 AGCGTGCGACCGTCCTCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCGGGTGGG 11573 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | || |||||||| || || ||||| | | || || || || | ||||| Sbjct 11572 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCG--ATAGTGTCTGACGACTCTA 11515 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || ||||| || || |||||||| |||||||| Sbjct 11514 CCTCCAGAGTGATCGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 11466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||||||||| || | | | | || | ||||| |||||||| ||| || Sbjct 11201 CTCCTTCTGAATGTTGTAGTCTGATAGAGTCCTGC-CATCCTCGAGCTGCTTGCCGGCGA 11143 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| || || | | |||||||||| || ||| ||| | | Sbjct 11142 AGATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCACAT 11083 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| |||| ||| ||| ||| | || ||||| || || |||||||| || | Sbjct 11082 TGTCGATGGTGTCGGAAGATTCCACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGA 11023 Query 48714 CAAAAATCTGCAT 48726 |||| |||||||| Sbjct 11022 CAAAGATCTGCAT 11010 >seq4858 Length=21104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| ||||||||||||||||| | ||| | ||||||| |||| Sbjct 12095 TGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTACGCCCATCCTCCAACTGC 12036 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || | | |||||| ||| || | | |||||||||| || || Sbjct 12035 TTCCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTA 11976 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | || ||||||| ||| ||| | ||||| || || ||||| Sbjct 11975 GCCTTGACGTTGTCAATCGTATCGGAGCTCTCTACCTCCAAGGTTATCGTCTTCCCGGTT 11916 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 |||||||| || || ||||||||| Sbjct 11915 AGAGTTTTGACGAAGATCTGCATC 11892 >seq12300 Length=44855 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| | | ||| ||||| || || ||||||||| ||||||||||| || Sbjct 12834 CCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGGCT 12893 Query 48560 AATTGTCGCT-CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| | | || |||| ||||||||| | |||| || | |||||| ||| || Sbjct 12894 AA-GGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGGG 12952 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || || ||||| || || ||| | | | |||||||||| | ||| Sbjct 12953 AATACCCTCTTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCAAC 13012 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || |||||||| || || | || || ||||| ||||||||| Sbjct 13013 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCATC 13061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418417668941915