Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2212 105 3e-18 seq10597 104 1e-17 seq10005 104 1e-17 seq39244 102 4e-17 seq18386 100 1e-16 seq16262 100 1e-16 seq6775 100 1e-16 seq3144 100 1e-16 seq2310 100 1e-16 seq346 100 1e-16 seq765 98.7 5e-16 seq14912 93.3 2e-14 >seq2212 Length=92968 Score = 105 bits (116), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 75519 TTGGCCCATGCAGTTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 75460 Query 11515 CTGAGCTAATGGGCC-GTCGACGATTGTGATT 11545 |||||||||| |||| || ||||| | | ||| Sbjct 75459 CTGAGCTAATAGGCCAGTTGACGACTATCATT 75428 >seq10597 Length=38347 Score = 104 bits (114), Expect = 1e-17 Identities = 81/95 (85%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 37688 AAAAAT--ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 37745 Query 11505 CTCTRACCAACTGAGCTAATGGGCC-GTCGACGAT 11538 |||| |||| |||||||||| |||| || ||| || Sbjct 37746 CTCTAACCAGCTGAGCTAATAGGCCAGTTGACTAT 37780 >seq10005 Length=24525 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 19503 AACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 19562 Query 11512 CAACTGAGCTAATGGGCC-GTCGACGAT 11538 || |||||||||| |||| || ||| || Sbjct 19563 CAGCTGAGCTAATAGGCCAGTTGACTAT 19590 >seq39244 Length=8136 Score = 102 bits (112), Expect = 4e-17 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 2326 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 2267 Query 11515 CTGAGCTAATGGGCC-GTCGACGAT 11538 |||||||||| |||| || ||| || Sbjct 2266 CTGAGCTAATAGGCCAGTTGACTAT 2242 >seq18386 Length=56149 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 49051 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 48992 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 48991 TGAGCTAATAGGCC 48978 >seq16262 Length=12622 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 7582 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 7641 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 7642 TGAGCTAATAGGCC 7655 >seq6775 Length=12301 Score = 100 bits (110), Expect = 1e-16 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 3784 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3725 Query 11516 TGAGCTAATGGGCC-GTCGACGAT 11538 ||||||||| |||| || ||| || Sbjct 3724 TGAGCTAATAGGCCAGTTGACTAT 3701 >seq3144 Length=9164 Score = 100 bits (110), Expect = 1e-16 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 6313 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 6372 Query 11516 TGAGCTAATGGGCC-GTCGACGAT 11538 ||||||||| |||| || ||| || Sbjct 6373 TGAGCTAATAGGCCAGTTGACTAT 6396 >seq2310 Length=202174 Score = 100 bits (110), Expect = 1e-16 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 181544 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 181603 Query 11516 TGAGCTAATGGGCC-GTCGACGAT 11538 ||||||||| |||| || ||| || Sbjct 181604 TGAGCTAATAGGCCAGTTGACTAT 181627 >seq346 Length=25473 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 17318 TGGCCCATGCAGTTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 17259 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 17258 TGAGCTAATAGGCC 17245 >seq765 Length=52854 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||| ||| |||| Sbjct 10500 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGATCTAACCA 10559 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 10560 GCTGAGCTAATAGGCC 10575 >seq14912 Length=55383 Score = 93.3 bits (102), Expect = 2e-14 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 11258 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 11199 Query 11512 CAACTGAG 11519 || ||||| Sbjct 11198 CAGCTGAG 11191 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 259732288840540