Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq862 178 2e-39 seq4549 174 2e-38 seq345864 129 7e-25 seq7860 120 4e-22 seq524375 114 2e-20 seq5622 100 4e-16 seq13424 86.0 8e-12 seq7807 82.4 1e-10 >seq862 Length=327473 Score = 178 bits (196), Expect = 2e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 138438 GGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGAT 138497 |||| ||||||||| |||||||||||||||||||| ||||||||||||| | ||||||| Sbjct 255137 GGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGAT 255196 Query 138498 GGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCA 138557 || || ||||||| || | || || | || ||||||| |||||||| |||||| Sbjct 255197 GGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCA 255256 Query 138558 ATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGT 138617 ||||| || ||||||| | ||||| ||||||||||| ||| ||||| ||||| | | Sbjct 255257 ATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACAT 255316 Query 138618 TGGCTTCACTTCTTTATGCTCTTTGT 138643 ||| | || ||||||||| | ||||| Sbjct 255317 TGGTTACATTTCTTTATGTTTTTTGT 255342 >seq4549 Length=62305 Score = 174 bits (192), Expect = 2e-38 Identities = 220/299 (74%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 138471 ACAGTAGAAAATACTTTGTATGAAGATGGCGAACAAT---CAAATACTTTTAAAGCATTT 138527 ||| ||||||||||||| | |||||||| || | ||||||| || || ||| Sbjct 53484 ACAATAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTT 53425 Query 138528 GAACCTA-CTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCA 138586 ||| || |||||| || |||| ||||||||||| || ||||||| | ||||| || Sbjct 53424 -AACATAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCA 53366 Query 138587 AATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCC 138646 |||||||| |||||||| |||| ||||| | ||||||||||| | ||||| || Sbjct 53365 AATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACC 53306 Query 138647 CGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGC 138706 | | ||| | || | || | |||| || ||||||| |||| |||||||| || Sbjct 53305 AATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGC 53246 Query 138707 GTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCT 138765 ||||| ||| | | |||||||| ||||||||| ||||||||||||| ||||| |||| Sbjct 53245 CTATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq345864 Length=152 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 138309 GGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTG 138368 |||||||| ||||||| |||||||| ||||| || |||||||||||||| ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 138369 TTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCA 138428 ||||| | || ||||||||||||||||| || ||||| || ||||||||||| || || Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 138429 GGTATTCTTGGTGGTGCTCTGCTCTGTGC 138457 ||| | | || | |||||| || ||||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq7860 Length=10955 Score = 120 bits (132), Expect = 4e-22 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 138129 CGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTG 138188 || |||| ||| | || || || ||||||||||| || |||||||| || ||| | || Sbjct 6700 CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTA 6641 Query 138189 ATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGCA--TCCGTCCCTAC 138245 || || |||||| | || || ||||| | |||| |||| | || | || || || Sbjct 6640 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTT---CAATTGCGACCTTAT 6584 Query 138246 AACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCT 138305 || |||||||||||||||| ||| || ||||| || || || ||| |||| ||||| Sbjct 6583 AATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCA 6524 Query 138306 TTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGT 138346 | ||||| || ||||||||||||| || |||||||| Sbjct 6523 CTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 6483 >seq524375 Length=364 Score = 114 bits (126), Expect = 2e-20 Identities = 125/165 (76%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||||| |||||||||||||| || |||||||| || | ||||||||||| || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC---TTTATTGTTGCTTTCATCGCTGCA 135490 ||||| ||||| || | |||| | || | |||||| |||| ||||||||||| Sbjct 256 ATGATCCCTACCCTATT---GACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCT 312 Query 135491 CCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCT 135535 ||||| || || || || || ||||| || |||||| |||| ||| Sbjct 313 CCTCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCT 357 >seq5622 Length=97820 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 138745 ATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCT 138804 || ||||||| ||||| ||||||||||| || | |||| | ||||||||| | |||| | Sbjct 54979 ATACTGAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTT 54920 Query 138805 GGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAA 138864 ||||||| || ||||||||||| |||||| || | || ||||| || || | || Sbjct 54919 GGATGGCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCC 54860 Query 138865 GAGGCAACGCTCT 138877 | || |||||||| Sbjct 54859 GTGGAAACGCTCT 54847 >seq13424 Length=38927 Score = 86.0 bits (94), Expect = 8e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 136098 TGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTT 136157 |||||||||||||||| ||||| || |||||||| |||| || ||||| || |||| Sbjct 6331 TGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTT 6272 Query 136158 GGCCTGTTGTCGGTATCTGGTT 136179 ||||||| || ||||||||||| Sbjct 6271 GGCCTGTAGTAGGTATCTGGTT 6250 >seq7807 Length=112412 Score = 82.4 bits (90), Expect = 1e-10 Identities = 100/135 (74%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 138402 AACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGT-----G 138456 ||||| |||||||||||||| | || ||| | | || |||||||||||| | Sbjct 47495 AACCCATTTCATATGATGGGTTT-GCCGGTGTATTGGGCACTGCTCTGCTCTGCCATGCG 47437 Query 138457 CTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTT 138516 ||||||| |||||||| ||||||||||||| | ||||||||| || ||||||| | Sbjct 47436 CTATTCACGGTGCTACCATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 47377 Query 138517 TTAAAGCATTTGAAC 138531 | | || ||| ||| Sbjct 47376 TCCATGCTTTTAAAC 47362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623635688016000