Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq524375 105 2e-18 seq13424 96.9 1e-15 >seq524375 Length=364 Score = 105 bits (116), Expect = 2e-18 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || || || ||||| || || || || ||||||||||| | ||||||||||| || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 19350 ATGATTCCTTGCTTACTAGCTGCTA-CTACTTGCTTTATACTCGCCTTTATCGCAGCACC 19408 ||||| ||| | || | |||| | || | || ||||| | ||||| ||||| || || Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTG-TTTATTATTGCCTTCATCGCTGCTCC 314 Query 19409 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTT 19453 ||||| || || ||||| || |||||||| ||||| ||||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCTTT 359 >seq13424 Length=38927 Score = 96.9 bits (106), Expect = 1e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 20011 GATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTA 20070 ||||||| || ||||||||| |||||||||||||||||||||||||||||| || || Sbjct 6334 GATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGG 6275 Query 20071 CTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGG 20121 ||| || || || || || ||| | ||| | | || ||| ||||||||| Sbjct 6274 CTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143494931107740