Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq7860 98.7 1e-15 seq524375 96.9 4e-15 seq5622 86.0 7e-12 >seq7860 Length=10955 Score = 98.7 bits (108), Expect = 1e-15 Identities = 166/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 172043 ACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACA 172102 || ||| ||| || || |||| ||||||||| || || |||| ||||| || | || Sbjct 6716 ACTAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCA 6657 Query 172103 TGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGG 172162 || | |||||||| |||||||||||| | | || ||||| |||| || |||| Sbjct 6656 CGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCA 6597 Query 172163 GATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCT- 172221 | || ||||| || ||| | |||||||| || ||||| || || | ||| Sbjct 6596 ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTT----TGTTTCTG 6541 Query 172222 --TTC-TAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGT 172276 ||| | || |||||| |||||||| | |||||||||| || ||| |||||||| Sbjct 6540 TATTCTTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 6483 >seq524375 Length=364 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || || || ||||| || |||||| || ||| | ||| | |||||||||||||| || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 170726 ATGATCCCATGTCTTCTAACTGCTGC-TGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| || | ||||| | | | ||||| ||| | || |||||||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTT 170829 ||| || || ||||| || ||| | || || ||| | || ||||| Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCTTT 359 >seq5622 Length=97820 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 172701 GAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATG 172760 || ||||| || |||||||| || || | |||| | ||||||||||| | || |||||| Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 172761 TCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGC 172820 || || |||||||| ||||| ||| || | ||||| || || || | || || || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 172821 AACGCACTATAA 172832 ||||| || ||| Sbjct 54854 AACGCTCTTTAA 54843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566334551190600