Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq25376 123 3e-23 seq507837 120 4e-22 seq2580 120 4e-22 seq41724 113 6e-20 seq516970 105 8e-18 seq537914 104 3e-17 seq370110 102 1e-16 seq1776 96.9 4e-15 seq58770 82.4 9e-11 >seq25376 Length=12287 Score = 123 bits (136), Expect = 3e-23 Identities = 375/578 (65%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||||| || ||||| ||||| ||||| | Sbjct 9943 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 9884 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| || |||||||| ||||||||||| || ||| || || |||||| Sbjct 9883 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGAGCAGAAACTCCCCGAGAAGAAG 9824 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || ||| ||||||| | | ||| || | ||| || ||| Sbjct 9823 ATCCCCTCGACGCAAGCGAAGGCAACGATCCGCTCCGCAAAGGTCTCGGAGCCGTC---G 9767 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||| | ||||| || || ||||| | || || || || | Sbjct 9766 ATCCAGCGGAGGGCCCACTGAGCCTTTTTGGCCACGCAAGGGACGGTCTCGATTGCGTGG 9707 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || ||| || || ||| || | || || || | ||| || || ||||| Sbjct 9706 AACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTACATC 9647 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| |||||||| ||||| || || ||||| | || |||| | | Sbjct 9646 TCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCGCGTGCTTCGGCGACC 9587 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | || || | ||| || || || || ||||| ||| || Sbjct 9586 TGGACCTCCTTCATGAAGCGGCCGCCCAGGTTCTCCAAAACGATGCCGTCGGAGGCGGCG 9527 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33780 || || || | || || | || || | ||||| || ||||| || | ||| | Sbjct 9526 AAGAAGGCGAGCACGTGGGTGATGAAGTGGCGCTCGTCGGGGGTTAGGTTTTCCCAGTGG 9467 Query 33781 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33840 || || | || | ||| || || ||| | ||||| || || ||||| ||||| || Sbjct 9466 CGGAGGTCCTGGGAGAGATCAACCTCCTCCGCGGTCCAGAAGGAAGCCTCGGCCTTCTTG 9407 Query 33841 TACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 ||||| | |||||| || || ||||| ||||| || Sbjct 9406 TACATTTCCCAGATCTCCGGGTACTGGATCGGGAACAT 9369 >seq507837 Length=291 Score = 120 bits (132), Expect = 4e-22 Identities = 188/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||| | ||||| || |||| | | ||||| ||||| ||||||||||| ||| Sbjct 278 GGGCACATGAGAGACCAGTCACCGTTCTGTTCGACTCGCTTCATGAAGAGATCAGGGATC 219 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 || || || || || |||| | || ||| || ||||| ||||| | ||| Sbjct 218 CAGAGGGCGTAGAAGAGTTCTCGAGCTCGGACTTCTTCCTTTCCGTGGTTCTTCCTGAGA 159 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 ||||||||| | | || || || ||||| || || | ||| ||||| | | || || Sbjct 158 TCGAGGAACTCGAAGATGTCCGAGTGCCATGGCTCGACGTAGATGGCAAAGGCACCTGGT 99 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || || || || | ||||| ||| ||||| || || |||| | ||| || Sbjct 98 CGCTTGTTACCACCTTGGTCGACGTATCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGT 39 Query 63423 ATAATACCGTTTGATATACCATTGGTACC 63451 | ||| ||||| || | ||||||||| || Sbjct 38 ACAATTCCGTTGGAGACACCATTGGTTCC 10 >seq2580 Length=28588 Score = 120 bits (132), Expect = 4e-22 Identities = 235/342 (69%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||||| || ||||| ||||| ||||| | Sbjct 12064 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 12005 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| || |||||||| ||||||||||| || ||| || || |||||| Sbjct 12004 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGAGCAGAAACTCCCCGAGAAGAAG 11945 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATG 33479 || || || || ||| || ||||||| | | ||| || | || ||| || ||| Sbjct 11944 ATCCCCTCGAC-GCACGCGAAGGCAACGATCCGCTCCGCAAAGGACTCGGAGC---CATC 11889 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | ||||| | |||||||| || ||||| || || || || || | Sbjct 11888 GATCCAGCGGAGGGCCCACTGCGCCTTCTTGGCCACGCAAGGGATGGTCTCGATCGCGTG 11829 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || || ||| || || ||| || | || || || | ||| || || ||||| Sbjct 11828 GAACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTACAT 11769 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 || || || ||||| |||||||| ||||| || || ||||| Sbjct 11768 CTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAA 11727 >seq41724 Length=31058 Score = 113 bits (124), Expect = 6e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||||||||||||||| | | || || |||||||| || ||||| Sbjct 25222 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 25163 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || ||||| || || || || || ||||| || |||||| Sbjct 25162 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGATCCCGAGAAGAAG 25103 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458 || || || || || ||||| ||||| |||| ||| Sbjct 25102 ATACCCTCGACGGCGGCAAATGCAATGAGTCGCTC 25068 >seq516970 Length=324 Score = 105 bits (116), Expect = 8e-18 Identities = 211/310 (68%), Gaps = 7/310 (2%) Strand=Plus/Minus Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || |||||||| || ||||| || ||||||||||| || ||||| |||||| Sbjct 324 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAGCCAGAGAAGAAG 265 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || || || || ||||| | | ||| | | | |||| Sbjct 264 ATACCCTCGACGGCGGCGAAAGCAATCAAGCGGCAGCCAAATGTCGAGTCCTTGTCGCAG 205 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||||| | ||||| |||||||| | || | ||||| || | || ||||| || Sbjct 204 ATCCACTTGAGGGCCCAGTCGGCCTTTCTCTTGATGCAAGGAATGTTGTCGATGGCGTTG 145 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACA 33598 ||||| ||| | || || || ||| || || ||||| | || || || Sbjct 144 AAGAGGTAGGTACGTTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAATGA--GTAAG 87 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | || || || ||||| || || || || || |||||||||||||| ||||||| | Sbjct 86 TCTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAACATCTGGCCTCGGGGA 27 Query 33659 TCTGTACTTC 33668 |||| || || Sbjct 26 TCTGAACCTC 17 >seq537914 Length=527 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||||||| | |||||||||||| || || ||||| || ||| | | || Sbjct 272 AGTTCCGGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCACCGTTGAGACATCATATG 213 Query 63671 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | ||||| || || ||||| | ||| |||||||| || | || | ||| | Sbjct 212 GTATGTTTTGATAGCAGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATCA 154 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 ||||||| ||||| ||||| || | ||| | | ||||| | ||| || | || | Sbjct 153 ACATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAAGACCTCTCAA 94 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| |||||||| || | || ||||||||| || || || || Sbjct 93 GGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 45 >seq370110 Length=160 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 33351 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33410 ||| || ||||| || ||||| ||||||||||| || ||||| || ||||| ||||| || Sbjct 160 GGAGAAGGTGAGACCCGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGA 101 Query 33411 TCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33454 ||| || |||||||||||||| || ||||| || |||| |||| Sbjct 100 TCCCGAGAAGAAGATTCCTTCGACGGCAGCGAAAGCAACGAGTC 57 >seq1776 Length=16993 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 |||||||||| | ||||| ||| || || ||||||||| || |||| || ||| Sbjct 7140 TTTCGTATAGGATGTACAACTTTTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 7199 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 |||| || || | ||| ||||| | || ||| | | |||| || |||||| |||| Sbjct 7200 CCTCATTTGGGCAAAACAAAGACCAATGCCCATCACCTTGGACTCTTTCCATAAAAAGAT 7259 Query 63235 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 |||| ||||||||||| | ||||||||||| | || ||| || || Sbjct 7260 CAGGTATCCAAAGAGCAAAAAATAGATCTCGAGCTCGATGCTCTTC 7305 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | ||| |||| |||| | |||| | ||| |||| ||| || Sbjct 7728 TCCCCCTTGATCAACATAACGAGCAGTGTCATTAAACACTCGAAGCATAGGAACAATGCC 7787 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || || | ||||| || || | || ||||| || ||||| |||||| || || Sbjct 7788 ATTGGAACTCCCATTTGTCCCACAAATGTAGCTACCTGCTGCACGGATATTATGAACAGA 7847 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 ||||| ||||| || || ||| ||| | || || || || || ||| | || Sbjct 7848 GAGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAGGTATCAAATAT 7907 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 7908 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAGCAGCTA 7950 >seq58770 Length=9062 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 63966 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 || || || |||||||| || || || | ||| ||||||||||| || ||||||||||| Sbjct 7217 TTCTTGGTCTCCTTGTGGAGGTTAGAAATGGCAATTCTGGCGGCAAGGATGGCATAATCG 7276 Query 64026 GGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 || || | || || ||||| ||| || | ||||| || || |||| | ||| || || Sbjct 7277 GGGTGCTTCGTGGT-CAAGTAGGCGGCGGTCTCGGCAGCAAGGTTGTCAAGTTCCACGGT 7335 Query 64085 TGTTACTCC 64093 |||||||| Sbjct 7336 CGTTACTCC 7344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618649526201400