Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq41724 102 8e-17 seq460352 100 3e-16 seq4858 95.1 1e-14 seq538179 86.0 6e-12 seq23076 86.0 6e-12 >seq41724 Length=31058 Score = 102 bits (112), Expect = 8e-17 Identities = 131/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 120325 GCTCGATGATGTTAGTGTTCACGATGACGTCGGCGGCAGCGAAAAACGCGAGAACGTGCT 120384 |||| | || ||| ||| ||||| |||| | ||| ||||| || ||||||||||| Sbjct 24820 GCTCAACGAGGTTCTCGTTGACGATACCGTCCGAGGCGGCGAAGAAGGCGAGAACGTGAG 24761 Query 120385 TAAGAAAAAAT--CGTTCTTTATCGTTCAGTTTTTTGTTCCAATCGTCAAAGTCCTTGGA 120442 ||| || | ||||| || ||||| || || |||| ||| |||| | ||||||||| Sbjct 24760 --AGATGAAGTGACGTTCGTTGTCGTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTTGGA 24703 Query 120443 CATGTCGATCTCTTCGACTTTCCAGTGACAATCGACCGCTTTCTTGTACGATTGCCAGA 120501 || ||||||||| ||| | ||||| | || | | || ||||||||| |||||||| Sbjct 24702 CAAGTCGATCTCCTCGGCAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGCCAGA 24644 >seq460352 Length=212 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 26796 GGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAG 26855 ||||| | |||||| |||| |||| || ||||||||||| | ||||| ||| Sbjct 212 GGAAAGACAATCACCCTCGAGGTAGAGTCGTCTGACACCATCGACAACGTCAAGTCGAAG 153 Query 26856 ATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAA 26915 ||| || || || || || ||||||||||| ||| | || |||| || |||||| || Sbjct 152 ATTCAGGATAAGGAGGGCATTCCTCCCGATCAGCAACGTCTGATTTTCGCCGGCAAGCAG 93 Query 26916 CTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTG 26975 ||||| |||| | | | | || || ||||| || || ||||||||| | ||| || Sbjct 92 CTCGAGGATGGACGTACCCTGTCTGATTACAACATCCAGAAGGAATCTACTCTGCATTTG 33 Query 26976 GTCCTGAGACTTAGAGGAGG 26995 |||||| | || | ||||| Sbjct 32 GTCCTGCGTCTGCGTGGAGG 13 >seq4858 Length=21104 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| |||| | || Sbjct 11434 AAGATGCAGATCTTCGTGAAAACCCTAACCGGTAAGACCATAACCCTCGAGGTCGAGAGC 11493 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | || || ||||| ||||||||||| || ||||||||| Sbjct 11494 TCCGACACCATCGATAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGAT 11553 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || ||||||| | || |||||| || || ||||| | | | | | || |||||| Sbjct 11554 CAGCAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTCGCCGACTAC 11613 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| |||| || || || Sbjct 11614 AACATCCAGAAGGAGTCGACTCTCCACCTCGTGCT 11648 >seq538179 Length=533 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || || |||| ||| | || |||| | Sbjct 136 ATGCAGATCTTCGTCAAAACTCTAACCGGGAAGACGATAACCTTGGAGGTAGAGAGCTCC 195 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 196 GATACGATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 255 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || ||| || ||| | || || | | | | || |||||| ||| Sbjct 256 CAGAGGCTCATCTTCGCCGGGAAGCAATTGGAGGACGGTCGCACGCTCGCCGACTACAAC 315 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || ||| | ||||||||||| || | |||||||| Sbjct 316 ATTCAGAAGGAGTCGACTTTGCATCTGGTCCTCCGATTGAGAGGAGG 362 >seq23076 Length=20243 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | ||||| | || | ||||| | Sbjct 11010 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTGGAATCTTCC 11069 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| ||||| || || || || || Sbjct 11070 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 11129 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| |||| || | | ||||| ||| Sbjct 11130 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCAGGACTCTATCAGACTACAAC 11189 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || |||||| | || ||||| ||| | ||| | || || Sbjct 11190 ATTCAGAAGGAGTCTACTCTGCACCTGGTGCTGCGTCTTCGTGGTGG 11236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475360138018800