Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4858 105 6e-18 seq418028 96.9 3e-15 seq460352 95.1 1e-14 seq12300 95.1 1e-14 seq10457 93.3 4e-14 seq2836 91.5 1e-13 seq195977 82.4 7e-11 >seq4858 Length=21104 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23975 TTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCAT 24034 |||| ||| | || ||||| | || || ||||| |||| || || | || ||| | Sbjct 11421 TTTTAAGCTACGAAAGATGCAGATCTTCGTGAAAACCCTAACCGGTAAGACCATAACCCT 11480 Query 24035 CGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 24094 ||| |||||| | |||||||||||| | || || ||||| ||||||||||| Sbjct 11481 CGAGGTCGAGAGCTCCGACACCATCGATAACGTAAAGGCCAAGATCCAGGACAAAGAAGG 11540 Query 24095 CATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAA 24154 ||| ||||||||||| ||| |||| || | || ||||||||| || ||||| | | | Sbjct 11541 CATCCCTCCCGATCAGCAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCAC 11600 Query 24155 CGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | || ||| || ||||| || || || || || Sbjct 11601 CCTCGCCGACTACAACATCCAGAAGGAGTCGAC 11633 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || || |||| |||||| | Sbjct 11665 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAGCTCT 11724 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| ||||| Sbjct 11725 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCGGATCAG 11784 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || || |||||| | || || | | | || |||||||||| Sbjct 11785 CAGCGCCTGATCTTCGCTGGGAAGCAATTGGAGGACGGGCGCACGCTCGCCGATTATAAC 11844 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || | ||| | || | ||||||| || || Sbjct 11845 ATTCAGAAGGAGTCGACCTTGCATCTTGTCCTCCGATTGAGGGGTGG 11891 >seq418028 Length=182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 || || ||||| |||| || || | || ||| |||| |||||| | |||||||||| Sbjct 176 TTCGTGAAAACCCTAACCGGTAAGACCATAACCCTCGAGGTCGAGAGCTCCGACACCATC 117 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | || || ||||| |||||||||||||| ||||||||||| ||| |||| Sbjct 116 GATAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAGCAGCGACTC 57 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGA 24145 || | || ||||||||| || ||||| Sbjct 56 ATCTTCGCCGGCAAGCAGCTTGAAGA 31 >seq460352 Length=212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAG 24077 ||||| | || ||| |||| || ||| | ||||||||||| | ||||| ||| Sbjct 212 GGAAAGACAATCACCCTCGAGGTAGAGTCGTCTGACACCATCGACAACGTCAAGTCGAAG 153 Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 ||| || || || ||||| ||||||||||| || | ||||||| || ||||||||| Sbjct 152 ATTCAGGATAAGGAGGGCATTCCTCCCGATCAGCAACGTCTGATTTTCGCCGGCAAGCAG 93 Query 24138 CTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTA 24197 ||||| |||| | | | | ||||| ||||| || || |||||||| | ||||| Sbjct 92 CTCGAGGATGGACGTACCCTGTCTGATTACAACATCCAGAAGGAATCTACTCTGCATTTG 33 Query 24198 GT 24199 || Sbjct 32 GT 31 >seq12300 Length=44855 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || || ||| | || ||| | ||||| ||| | Sbjct 13516 ATGCAAATCTTTGTCAAAACCCTTACCGGGAAAACCATAACCTTGGAAGTTGAGAGCTCG 13457 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| || || || || || || || ||||| Sbjct 13456 GACACCATTGATAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAG 13397 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||||||||||||||||||| ||| | | |||||| ||| Sbjct 13396 CAGAGGTTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTTGCCGATTACAAC 13337 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| ||||| || | || || ||| Sbjct 13336 ATCCAAAAGGAATCCACCCTCCACTTGGTG 13307 >seq10457 Length=19256 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||||| || || | || ||| |||| |||||| | | Sbjct 3888 ATGCAGATCTTCGTCAAAACCTTAACCGGGAAGACCATCACCCTCGAGGTCGAGAGCTCC 3947 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 3948 GACACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGATCAG 4007 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGAC 24149 ||| || |||| | || ||| |||||| | || || ||| Sbjct 4008 CAGCGATTGATCTTCGCCGGGAAGCAATTGGAGGACGAC 4046 >seq2836 Length=35635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | |||||||| | ||||| | || || ||| | Sbjct 32654 ATGCAGATTTTTGTCAAGACACTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTCT 32595 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || ||| ||| ||||||||||| || || || ||||| Sbjct 32594 GATACCATAGATAATGTGAAGGCAAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 32535 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| || || ||||| || || |||| | ||| | |||||| ||| Sbjct 32534 CAGAGGCTAATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAAC 32475 Query 24171 ATTCAAAAAGAATCTACA 24188 ||||| || || |||||| Sbjct 32474 ATTCAGAAGGAGTCTACA 32457 >seq195977 Length=119 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || || |||||||| ||||| ||||| Sbjct 1 GACACCATCGACAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATCCCTCCGGATCAG 60 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| ||||||| | || |||||||||||||||||| Sbjct 61 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGA 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044050946825