Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq12300 98.7 8e-16 seq538179 95.1 1e-14 seq9269 95.1 1e-14 seq23076 89.7 4e-13 seq58939 86.0 5e-12 seq18120 84.2 2e-11 >seq12300 Length=44855 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| || ||||||||||| |||||||| ||||| | ||| | | || Sbjct 12848 CAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGGCTAAGGTCCTTCCATC 12907 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || || || ||| |||| | || ||| |||||| || | ||||||||||| Sbjct 12908 TTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGGGAATACCCTCTTTGTC 12967 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | | || ||| ||| |||| || ||| Sbjct 12968 TTGGATCTTAGC--CTTAACATTGTCAATGGTATCGGAACTCTCAACCTCCAAAGTAATG 13025 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| |||| || || ||||| |||||||| Sbjct 13026 GTTTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 13060 >seq538179 Length=533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| | | || |||| ||||| || |||||||| || |||||||||||||| Sbjct 363 CCCTCCTCTCAATCGGAGGACCAGATGCAAAGTCGACTCCTTCTGAATGTTGTAGTCGGC 304 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || ||||||||||||| || || || | || |||| ||| |||||| ||| Sbjct 303 GAGCGTGCGACCGTCCTCCAATTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGG 244 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || || ||||| || || || ||| || | | | | || ||| | ||| Sbjct 243 AATTCCTTCCTTGTCCTGGATCTTAGC--CTTGACGTTGTCAATCGTATCGGAGCTCTCT 186 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || || ||||| || |||||||| || |||||||| Sbjct 185 ACCTCCAAGGTTATCGTCTTCCCGGTTAGAGTTTTGACGAAGATCTGCAT 136 >seq9269 Length=22462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || || | |||||| || |||||||| || |||||||||||||| Sbjct 15056 CCCTCCACGAAGGCGAAGCACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGC 14997 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| | ||||| || || | || || ||||| |||||| || Sbjct 14996 CAAAGTCCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGG 14937 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || |||||| | | | | ||||| | ||| Sbjct 14936 AATGCCCTCCTTGTCTTGGATCTTAGC--CTTCACATTGTCGATGGTGTCAGATGACTCG 14879 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || || ||||| || || || || |||||||| Sbjct 14878 ACCTCTAGGGTTATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 14829 >seq23076 Length=20243 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 11236 CCACCACGAAGACGCAGCACCAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAT 11177 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || || | ||||| | || ||||| || | || || ||||| ||||| || Sbjct 11176 AGAGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGA 11117 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| || | | |||||| | | | | |||||| | ||| Sbjct 11116 ATGCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCGGAAGATTCCACC 11057 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || || || |||||||| |||||||| Sbjct 11056 TCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 11010 >seq58939 Length=9406 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || || || |||| || || || |||||||| || ||||||||||| | Sbjct 118 CCGCCACGAAGTCTGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAG 177 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||||||||| || || || || | || || ||||| |||||| || Sbjct 178 AGCGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 237 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | | ||| || | | | | ||||| | ||| | Sbjct 238 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACT 297 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| ||||| || || || ||||| || |||||||| Sbjct 298 TCCAATGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATCTGCAT 344 >seq18120 Length=99179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || || | || || || |||||||| || ||||||||||| | Sbjct 92592 CCTCCTCGCAGACGAAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 92533 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||||| | || ||||| || | || || ||||| ||||| || Sbjct 92532 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCAGGGGGA 92473 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | |||| Sbjct 92472 ATACCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCAATGGTGTCGGAAGACTCCA 92415 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || || |||||||| || ||||| Sbjct 92414 CCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACAAAGATTTGCAT 92366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402363190125850