Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq507837 116 5e-21 seq2580 116 5e-21 seq537914 109 7e-19 seq41724 104 3e-17 seq1776 93.3 5e-14 seq370110 89.7 6e-13 >seq507837 Length=291 Score = 116 bits (128), Expect = 5e-21 Identities = 187/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 63038 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63097 || ||||| | ||||| || |||| | | ||||| ||||| ||||||||||| ||| Sbjct 278 GGGCACATGAGAGACCAGTCACCGTTCTGTTCGACTCGCTTCATGAAGAGATCAGGGATC 219 Query 63098 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63157 || || || || || |||| | || ||| || ||||| ||||| | ||| Sbjct 218 CAGAGGGCGTAGAAGAGTTCTCGAGCTCGGACTTCTTCCTTTCCGTGGTTCTTCCTGAGA 159 Query 63158 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63217 ||||||||| | | || || || ||||| || || | ||| ||||| | | || || Sbjct 158 TCGAGGAACTCGAAGATGTCCGAGTGCCATGGCTCGACGTAGATGGCAAAGGCACCTGGT 99 Query 63218 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63277 || ||||| || || || || | ||||| ||| ||||| || || |||| | ||| || Sbjct 98 CGCTTGTTACCACCTTGGTCGACGTATCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGT 39 Query 63278 ATAATACCATTGGATGTACCATTGGTCCC 63306 | ||| || ||||| ||||||||| || Sbjct 38 ACAATTCCGTTGGAGACACCATTGGTTCC 10 >seq2580 Length=28588 Score = 116 bits (128), Expect = 5e-21 Identities = 235/343 (69%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || |||||||||| || | ||| ||||| ||||| | Sbjct 12064 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 12005 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||||| || |||||||| ||||||||||| || ||| || || || ||||| Sbjct 12004 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGA-GCAGAAACTCCCCGAGAAGAA 11946 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATG 32836 || || || || ||| ||||||| | | ||| || | || ||| || ||| Sbjct 11945 GATCCCCTCGACGCACGCGAAGGCAACGATCCGCTCCGCAAAGGACTCGGAGC---CATC 11889 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | ||||| | |||||||| || ||||| || ||||| || || | Sbjct 11888 GATCCAGCGGAGGGCCCACTGCGCCTTCTTGGCCACGCAAGGGATGGTCTCGATCGCGTG 11829 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 || || ||| || || ||| || | || || |||| ||| || || ||||| Sbjct 11828 GAACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTACAT 11769 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 || || || ||||| |||||||| || || || || |||||| Sbjct 11768 CTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAG 11726 >seq537914 Length=527 Score = 109 bits (120), Expect = 7e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||||||| | |||||||||||| ||||| ||||| || ||| | | || Sbjct 272 AGTTCCGGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCACCGTTGAGACATCATATG 213 Query 63526 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | ||||| || || ||||| | ||| |||||||| || | || | ||| | Sbjct 212 GTATGTTTTGATAGCAGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATCA 154 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 ||||||| ||||| ||||| || | ||| | | ||||| | ||| || | || | Sbjct 153 ACATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAAGACCTCTCAA 94 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| |||||||| || | || ||||||||| || || || || Sbjct 93 GGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 45 >seq41724 Length=31058 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | | || | |||||||| || ||||| Sbjct 25222 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 25163 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || || ||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 25162 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGATCCCGAGAAGAAG 25103 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 32815 || || || || || ||||| ||||| |||| ||| Sbjct 25102 ATACCCTCGACGGCGGCAAATGCAATGAGTCGCTC 25068 >seq1776 Length=16993 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 62970 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029 |||||||||| | ||||| ||| || || ||||||||| || ||| || ||| Sbjct 7140 TTTCGTATAGGATGTACAACTTTTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 7199 Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089 |||| || || | ||| ||||| | || ||| | | |||| || |||||| |||| Sbjct 7200 CCTCATTTGGGCAAAACAAAGACCAATGCCCATCACCTTGGACTCTTTCCATAAAAAGAT 7259 Query 63090 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 |||| ||||||||||| | ||||||||||| | || ||| || || Sbjct 7260 CAGGTATCCAAAGAGCAAAAAATAGATCTCGAGCTCGATGCTCTTC 7305 >seq370110 Length=160 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 ||| || ||||| || ||||| ||||||||||| || ||||| || ||||| || || || Sbjct 160 GGAGAAGGTGAGACCCGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGA 101 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTC 32811 ||| || ||||| |||||||| || || || || |||| |||| Sbjct 100 TCCCGAGAAGAAGATTCCTTCGACGGCAGCGAAAGCAACGAGTC 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629260612434000