Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2836 104 2e-17 seq538179 95.1 1e-14 seq12300 95.1 1e-14 seq23076 93.3 4e-14 seq4858 89.7 4e-13 >seq2836 Length=35635 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || || || |||| || |||| || ||| ||| Sbjct 32882 ATGCAGATCTTTGTCAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 32823 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| ||||| || || || || || || Sbjct 32822 GATACAATTGATAATGTCA---AAGCCAAAATTCAG-GACAAGGAGGGAATCCCTCCAGA 32767 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||| || ||||| || || |||| || ||| ||| ||||| Sbjct 32766 CCAGCAGAGGCTGATCTTTGCTGGAAAACAGTTGGAGGATGGGCGTACTTTGGCTGATTA 32707 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||||||||| || || || || || Sbjct 32706 CAACATCCAGAAAGAATCCACCCTCCACTTGGTTCT 32671 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || || || | ||||| | || |||||| || Sbjct 31971 AATGCAGATTTTTGTGAAGACTCTTACTGGAAAGACTATCACCCTTGAGGTGGAGAGCTC 31912 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || |||| ||||||| | || || || ||||||||||| || | Sbjct 31911 CGATACAATTGATAATGTCA---AAGCAAAGATCCAA-GATAAGGAAGGGATTCCTCCGG 31856 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||| || | || ||||| || || ||| | || |||| || ||| | | |||| Sbjct 31855 ATCAGCAGAGGCTCATCTTTGCAGGGAAGCAACTTGAGGATGGCCGTACTCTTGCTGATT 31796 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||| ||||| || || ||| | || || Sbjct 31795 ACAATATTCAAAAGGAATCAACACTCCATCTTGTTCT 31759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || | || || | || || ||| ||| Sbjct 32654 ATGCAGATTTTTGTCAAGACACTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTCT 32595 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||||| ||| ||||||||||| ||||| || || || Sbjct 32594 GATACCATAGATAATGTGAAGGCAAAAATTCAG-GACAAAGAAGGAATTCCCCCAGATCA 32536 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| || || || || | || |||| || ||| ||| ||||||||| Sbjct 32535 GCAGAGGCTAATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAA 32476 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 32475 CATTCAGAAGGAGTCTACACTCCA 32452 >seq538179 Length=533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| |||||| |||| || || ||||||| | || |||||| || Sbjct 364 ATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATCACGCTGGAGGTGGAGAGCTCG 423 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | || | ||| ||||| ||||||||||| || ||||| Sbjct 424 GACACGATTGACAACGTGAAGGCCAAGATTCAG-GACAAGGAAGGGATTCCTCCGGACCA 482 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||| || | || |||||||| || || || || |||| || ||| Sbjct 483 GCAGAGGCTCATCTTTGCCGGGAAGCAGTTGGAGGATGGGCGTACT 528 >seq12300 Length=44855 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || |||| ||| | || || ||| ||| Sbjct 12604 ATGCAGATTTTCGTGAAGACCTTGACAGGGAAGACCATTACATTGGAGGTTGAGAGTTCT 12545 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || |||| ||||| | ||| ||||| || || ||||| || || || Sbjct 12544 GATACAATTGATAATGTGAAAGCAAAGATTCAG-GACAAGGAGGGAATTCCTCCGGATCA 12486 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||| ||||| ||||| || | ||||||| | ||| ||| |||||||| Sbjct 12485 GCAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGAACTCTGGCGGATTACAA 12426 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| ||||| || || || || || Sbjct 12425 TATCCAAAAGGAGTCTACCCTGCA 12402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||||||||| || ||| |||| || | || || || || Sbjct 12833 AATGCAGATTTTTGTGAAGACTTTGACGGGAAAAACCATAACCTTGGAGGTTGAAAGTTC 12774 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || || ||| || || |||||||| || || ||||| ||| Sbjct 12773 GGATACTATTGA--CAATGTCAAGGCGAAGATACAAGACAAAGAGGGCATCCCACCAGAC 12716 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || |||| ||||| || || || | ||||||| | || | | |||||| Sbjct 12715 CAGCAAAGGCTTATCTTTGCAGGAAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTAC 12656 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || || ||| | ||||| Sbjct 12655 AATATTCAGAAGGAGTCTACCCTTCATCTGGTGCT 12621 >seq23076 Length=20243 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || | ||||| | || || |||||||| Sbjct 11466 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACGATCACTCTGGAGGTAGAGTCGTCA 11525 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| || || || ||||| ||||| Sbjct 11526 GACACTATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCCGACCAG 11585 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || || || || || | |||||| | || ||||| Sbjct 11586 CAGCGTCTCATTTTCGCTGGTAAGCAGTTGGAGGACGGTCGCACGCTCTCTGACTACAAC 11645 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || || || || || || || | | || ||||||| Sbjct 11646 ATTCAGAAGGAGAGTACCCTGCACTTGGTCCTGCGATTGAGGGGAGGAA 11694 >seq4858 Length=21104 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | |||||||| |||| || |||| || ||| || Sbjct 11437 ATGCAGATCTTCGTGAAAACCCTAACCGGTAAGACCATAACCCTCGAGGTCGAGAGCTCC 11496 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| || ||| ||||||||||| || || || || || Sbjct 11497 GACACCATCGA-TAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCA 11555 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||| || | ||||| | |||||| | | ||| ||||| Sbjct 11556 GCAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTCGCCGACTACAA 11615 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 11616 CATCCAGAAGGAGTCGACTCTCCACCTCGTGCT 11648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430413234780725