Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq862 141 1e-28 seq4549 134 2e-26 seq7860 125 8e-24 seq524375 109 6e-19 seq345864 104 3e-17 seq13424 91.5 2e-13 >seq862 Length=327473 Score = 141 bits (156), Expect = 1e-28 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 167883 TGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAG 167942 |||| | ||| || ||||||| ||| |||| |||||| | | |||||||||||| | Sbjct 255147 TGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGATGGTGATGGTG 255206 Query 167943 CAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTG 168002 |||| || ||| | || || | | ||||| | || ||||||||||| |||||||| Sbjct 255207 CAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCA 255266 Query 168003 CTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACT 168062 ||||||| || ||||| ||||| ||||| ||| |||| |||||| | |||||| || | Sbjct 255267 CTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACATTGGTTACATT 255326 Query 168063 TCTTTATGCTTTTCGT 168078 |||||||| |||| || Sbjct 255327 TCTTTATGTTTTTTGT 255342 >seq4549 Length=62305 Score = 134 bits (148), Expect = 2e-26 Identities = 209/298 (70%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 167906 ACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAG---CAAACACTTTCAAAGCATTT 167962 ||| |||| |||||| | | |||||||| ||| | | |||| || ||| || ||| Sbjct 53484 ACAATAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTT 53425 Query 167963 GATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAA 168022 | | ||||| | | |||||||||| |||||||| ||||||| || ||||| ||| Sbjct 53424 AACATAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAA 53365 Query 168023 ATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCT 168082 || |||| ||||||| | |||| ||||||| ||||||||||| | || || || Sbjct 53364 ATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCA 53305 Query 168083 GTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCT 168142 | | || | || | || || |||| || | ||||| | || || || ||||| Sbjct 53304 ATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCC 53245 Query 168143 TATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCT 168200 |||||||| | | ||| ||| | | |||||| | ||||| || ||||| ||||||| Sbjct 53244 TATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq7860 Length=10955 Score = 125 bits (138), Expect = 8e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 167552 GGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 167611 |||||||| | | ||||| || | || || || ||| ||||||| || |||||||| Sbjct 6712 GGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGC 6653 Query 167612 GCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATC 167671 || |||| || ||||| || ||| | || |||||||| | | || || | Sbjct 6652 GCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTG 6593 Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTC 167731 || ||||| ||||| || || || |||| ||| |||||||| ||||| ||||| || | Sbjct 6592 CGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTG 6533 Query 167732 ATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTG 167783 || ||||| || || ||||| ||||||||||||| || |||||||||| Sbjct 6532 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTTG 6481 >seq524375 Length=364 Score = 109 bits (120), Expect = 6e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||||||||||||||| || | ||||| ||||| | ||||||||||| || Sbjct 195 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 254 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 ||||| || || || ||| | |||||| || || || || | || ||| | || || | Sbjct 255 AATGATCCCTACCCTATTGACTGCAACC-TCCGTGTTTATTATTGCCTTCATCGCTGCTC 313 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCT 166215 ||||||| || |||||||| ||||||||||| || | |||||| Sbjct 314 CTCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCT 357 >seq345864 Length=152 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 167754 GTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTAC 167813 ||||||| ||||| || ||||| |||||||| || || | ||| | | || | | Sbjct 13 GTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCC 72 Query 167814 AGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAG 167873 | ||||||||||||||||| || |||||||||||||||||||| || |||||| | ||| Sbjct 73 AAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAG 132 Query 167874 GCGGTGCATTGCTTTCTGCA 167893 | | ||| | |||| |||| Sbjct 133 GAGCTGCTCTTCTTTGTGCA 152 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 166778 TGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCAT 166837 ||||||||||||| ||| ||||| || ||||| || | || |||||||| || || | Sbjct 6331 TGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTT 6272 Query 166838 GGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGG 166885 ||||||| || ||||||||||| || ||| | ||| | ||||| |||| Sbjct 6271 GGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563318701884000