Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq41724 125 8e-24 seq516970 120 3e-22 seq25376 104 3e-17 seq39972 95.1 1e-14 seq3386 93.3 5e-14 seq5941 89.7 6e-13 seq11414 87.8 2e-12 seq4869 87.8 2e-12 seq2747 87.8 2e-12 seq12317 86.0 7e-12 seq2580 86.0 7e-12 seq1265 86.0 7e-12 seq1355 82.4 8e-11 >seq41724 Length=31058 Score = 125 bits (138), Expect = 8e-24 Identities = 375/589 (64%), Gaps = 26/589 (4%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| ||||| || || || | ||| ||| ||| || | Sbjct 25223 GCAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 25164 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || ||||| ||||||||||| || || || ||||| || || || || Sbjct 25163 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGATCCCGAGAAGAA 25104 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || ||||| |||||||| | | || |||||||| | ||| || ||| Sbjct 25103 GATACCCTCGACGGCGGCAAATGCAATGAGTCGCTCGGCAAAGGTGGCGTTCTTGTCGCT 25044 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||||| | ||||| ||||| |||| ||| | || | || |||| |||| Sbjct 25043 GATCCATCGCAGGGCCCAGTCGGCCTTTTGCTTGACGACGGGGATGGTCTCGACTGCGTC 24984 Query 93331 AAATAGGTAATC-----------------------TCGCTCGTCCGAATCTCGTATGTAT 93367 || ||| | || | || ||||| Sbjct 24983 GAAAAGGAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGAATGTAA 24924 Query 93368 GTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCG 93427 || || || | || || || | || || |||| |||||||| || ||||| ||| Sbjct 24923 GTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCG 24864 Query 93428 TAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCA 93487 ||||| |||| || || | | ||| ||||| ||| || | ||| ||||| || || Sbjct 24863 TAGAAGCATCGCGCCTCAGCGGCCTGGACTTCAGAAGAGAACCGCTCAACGAGGTTCTCG 24804 Query 93488 TTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCA 93547 ||||| ||||| || || || || || || || | | || || || || || Sbjct 24803 TTGACGATACCGTCCGAGGCGGCGAAGAAGGCGAGAACGTGAGAGATGAAGTGACGTTCG 24744 Query 93548 TCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACA 93604 | || || ||| || ||||| ||| | || || || | |||| || ||| || Sbjct 24743 TTGTCGTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCGATCTCCTCGGCA 24684 Query 93605 GTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 ||||| || || || ||||| || |||||||| | ||| || | ||||| Sbjct 24683 GTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGCCAGATCTGTTGAT 24635 >seq516970 Length=324 Score = 120 bits (132), Expect = 3e-22 Identities = 208/300 (69%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 || || || ||||||||||| || || ||||| || ||||| || || ||||| || Sbjct 315 AGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAGCCAGAGAAGAAGATACCCTCG 256 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||||| || || || | | || | |||| | | | || || |||||| || Sbjct 255 ACGGCGGCGAAAGCAATCAAGCGGCAGCCAAATGTCGAGTCCTTGTCGCAGATCCACTTG 196 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTTAAATAGGTA 93339 | ||||| ||||| ||| |||| || ||||| | |||| ||||| ||||| || ||||| Sbjct 195 AGGGCCCAGTCGGCCTTTCTCTTGATGCAAGGAA-TGTTGTCGATGGCGTTGAAGAGGTA 137 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 || | | | || | |||||||| ||||| | || || || | || || || Sbjct 136 GGTACGTTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAATGAGTAAGTCTCGGAGTG 77 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| |||||||| |||||||||||||| || || | |||||| || || Sbjct 76 GATGTTCTCCATCATGATTTGGAAACCGTAGAAACATCTGGCCTCGGGGATCTGAACCTC 17 >seq25376 Length=12287 Score = 104 bits (114), Expect = 3e-17 Identities = 379/590 (64%), Gaps = 5/590 (1%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||| | || |||||| |||||| || | || |||||||| || |||| |||||| Sbjct 9953 GTAGAGTAGGCACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGA 9894 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||| || || || || | | ||||| || || ||||||||||||| |||| ||||| | Sbjct 9893 GAACGTCAAGCCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTG-AGCAGAAACTCC 9835 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || || || ||| || || || || || || || ||||| | ||| Sbjct 9834 CCGAGAAGAAGATCCCCTCGACGCAAGCGAAGGCAACGATCCGCTCCGCAAAGGTCTCGG 9775 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | |||||| | ||||| | || ||||| | ||||| | || | Sbjct 9774 A---GCCGTCGATCCAGCGGAGGGCCCACTGAGCCTTTTTGGCCACGCAAGGGACGGTCT 9718 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 |||| |||| || ||| | |||| ||||||| ||||| || || | || | Sbjct 9717 CGATTGCGTGGAACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGA 9658 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | ||||| || || |||| ||||| || || || ||||| || ||||| | | Sbjct 9657 GGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCGCGTG 9598 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 |||| | || ||| || || | || | | | || || || || || || | Sbjct 9597 CTTCGGCGACCTGGACCTCCTTCATGAAGCGGCCGCCCAGGTTCTCCAAAACGATGCCGT 9538 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 |||| || || || || || | | || | || || || ||| || | || | Sbjct 9537 CGGAGGCGGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGGCGCTCGTCGGGGGTTAGGT 9478 Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 | ||||| | | || || | || ||||| || || || | ||||| || || || | Sbjct 9477 TTTCCCAGTGGCGGAGGTCCTGGGAGAGATCAACCTCCTCCGCGGTCCAGAAGGAAGCCT 9418 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 | || || |||||||| ||||| || || | || || || || || ||| Sbjct 9417 CGGCCTTCTTGTACATTTCCCAGATCTCCGGGTACTGGATCGGGAACATG 9368 >seq39972 Length=6937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/104 (81%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 4984 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 4925 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || ||||| |||||||| | | | |||||||| Sbjct 4924 GTGGGTTCAAATCCCACTTCTGACAAAAAAAAAATTGAATTTTT 4881 >seq3386 Length=46439 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/104 (81%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||| || | || || | || Sbjct 8710 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTTGTCCTCTAACGAGGGC 8769 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || ||||| |||||||| | |||| ||||||| Sbjct 8770 GTGGGTTCAAATCCCACTTCTGACAAA--AAAATTGAAATTTTT 8811 >seq5941 Length=12471 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 4101 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGA 4044 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 4043 GGGCGTGGGTTCAAATCCCACTTCTGACA 4015 >seq11414 Length=97186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 16474 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 16417 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 16416 GGCGTGGGTTCAAATCCCACTTCTGACA 16389 >seq4869 Length=26436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 10435 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 10492 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 10493 GGCGTGGGTTCAAATCCCACTTCTGACA 10520 >seq2747 Length=273296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 51455 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 51398 Query 126328 TTCGAACCCCACACCTGACA-AATTATTATTG 126358 ||| || |||||| ||| || |||| |||||| Sbjct 51397 TTCAAATCCCACAGCTGTCATAATTTTTATTG 51366 >seq12317 Length=16264 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 6867 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 6810 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 6809 GCGTGGGTTCAAATCCCACTTCTGACA 6783 >seq2580 Length=28588 Score = 86.0 bits (94), Expect = 7e-12 Identities = 232/352 (66%), Gaps = 5/352 (1%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||| | || |||||| |||||| || | || |||||||| || |||| |||||| Sbjct 12074 GTAGAGTAGGCACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGA 12015 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||| || || || || | | ||||| || || ||||||||||||| |||| ||||| | Sbjct 12014 GAACGTCAAGCCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTG-AGCAGAAACTCC 11956 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || || || ||| || || || || || || || ||||| ||| Sbjct 11955 CCGAGAAGAAGATCCCCTCGACGCACGCGAAGGCAACGATCCGCTCCGCAAAGGACTCGG 11896 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | |||||| | ||||| | || || || | ||||| | || | Sbjct 11895 A---GCCATCGATCCAGCGGAGGGCCCACTGCGCCTTCTTGGCCACGCAAGGGATGGTCT 11839 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 |||| |||| || ||| | |||| ||||||| ||||| || || | || | Sbjct 11838 CGATCGCGTGGAACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGA 11779 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAA 93432 | ||||| || || |||| ||||| || || || ||||| || ||||| Sbjct 11778 GGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAA 11727 >seq1265 Length=57461 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 22287 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 22230 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||| || ||||| |||||||| | ||| Sbjct 22229 CGTGGGTTCAAATCCCACTTCTGACAAACTTTTA 22196 >seq1355 Length=191410 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 50495 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 50438 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 50437 TTCAAATCCCACAGCTGTCAATTT 50414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553019052144600