Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq12300 96.9 2e-15 >seq12300 Length=44855 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || || ||||| |||||||| ||| |||| ||| | Sbjct 12833 AATGCAGATTTTTGTGAAGACTTTGACGGGAAAAACCATAACCTTGGAGGTTGAAAGTTC 12774 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || || || |||||||| | || | |||| Sbjct 12773 GGATACTATTGACAATGTCAAGGCGAAGATACAAGACAAAGAGGGCATCCCACCAGACCA 12714 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || ||||||||||| || || || || |||||| | || | || |||||||| Sbjct 12713 GCAAAGGCTTATCTTTGCAGGAAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTACAA 12654 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||| ||||| |||||| |||| | || || || || || Sbjct 12653 TATTCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCTTGCGGGGTGG 12606 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || |||||||| || || ||||| ||| | | Sbjct 13289 AATGCAAATTTTTGTGAAGACCTTGACCGGCAAAACTATCACTTTGGAAGTTGAAAGCTC 13230 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| ||| || ||||| |||||| | || |||| Sbjct 13229 TGATACCATTGATAATGTTAAGGCAAAGATCCAAGATAAGGAGGGTATCCCCCCGGACCA 13170 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | || |||||||| || |||||||||||| || ||| | || ||||| || Sbjct 13169 GCAGAGGTTGATTTTTGCTGGGAAGCAACTAGAAGATGGAAGGACTCTAGCTGATTATAA 13110 Query 22013 TATTCAGAAGGAATCTAC 22030 |||||||||||| || || Sbjct 13109 TATTCAGAAGGAGTCCAC 13092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || |||||||| ||| ||||| || | | Sbjct 13516 ATGCAAATCTTTGTCAAAACCCTTACCGGGAAAACCATAACCTTGGAAGTTGAGAGCTCG 13457 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| |||||| | || | | || Sbjct 13456 GACACCATTGATAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAG 13397 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||||||||| ||||| |||||| ||| | ||||||||||| Sbjct 13396 CAGAGGTTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTTGCCGATTACAAC 13337 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || |||||||| || || || |||| | ||| | ||||| ||| Sbjct 13336 ATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGTGGA 13289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355715886402910