Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq338124 152 4e-32 seq2836 91.5 1e-13 seq538179 84.2 2e-11 seq4858 84.2 2e-11 >seq338124 Length=149 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 149 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 90 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 89 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 52 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 149 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 90 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 89 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 52 >seq2836 Length=35635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| || || |||| || || ||| || ||||| ||||||||||| ||| Sbjct 32656 CCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCAGCC 32715 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || ||||| || || || ||||| ||||| | |||||| || || Sbjct 32716 AAAGTACGCCCATCCTCCAACTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGG 32775 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGAT-TC 34076 | | ||| |||||| | | |||| |||| || | | || |||||| || | || Sbjct 32776 ATTCCCTCCTTGTCC-TGAATTTTGGCTT--TGACATTATCAATTGTATCAG-AGCTCTC 32831 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||| ||||| || ||||| || || ||||| |||||||| ||||| Sbjct 32832 GACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTGCAT 32882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| || || || || ||||| || ||||||||||||||||||||||||||||| Sbjct 31515 ACCACCTCGGAGGCGGAGAACAAGATGCAGGGTGCTCTCCTTCTGAATGTTGTAATCTGC 31574 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | || || | ||||| || ||||| || || | |||||||||| || Sbjct 31575 TAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGG 31634 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | | ||| |||||| ||| || Sbjct 31635 GATCCCCTCCTTGTCCTGAATCTT 31658 >seq538179 Length=533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || || || ||||| | || ||||||||||||||| ||||| || Sbjct 134 CCACCCCTCAATCGGAGGACAAGATGCAAGGTCGACTCCTTCTGAATGTTATAATCGGCG 75 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| ||||||||||| || || || |||||||||||||||||| Sbjct 74 AGCGTGCGCCCGTCCTCCAATTGCTTCCCAGCGAAGATCAGGCGCTGCTGATCC 21 >seq4858 Length=21104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || || || ||||| | || ||||||||||||||| ||||| || Sbjct 11891 CCACCCCTCAATCGGAGGACAAGATGCAAGGTCGACTCCTTCTGAATGTTATAATCGGCG 11832 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| ||||||||||| || || || |||||||||||||||||| Sbjct 11831 AGCGTGCGCCCGTCCTCCAATTGCTTCCCAGCGAAGATCAGGCGCTGCTGATCC 11778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394391574035830