Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6427 129 1e-24 seq41724 102 2e-16 seq25376 100 6e-16 >seq6427 Length=124401 Score = 129 bits (142), Expect = 1e-24 Identities = 181/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 334101 ATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCA 334160 |||||||| | ||||| |||| | ||||| ||||| || ||||| || ||||| Sbjct 111235 ATGAAGTCCAGGATAGAAATGTCACCCTCGGAGCCGTCCAGGTCGTGCTCGACGTACCAG 111176 Query 334161 GTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATC 334220 ||| | | || | |||||||| || || | |||||||||| ||||||||||| Sbjct 111175 GTTCGGACCTCTTCTGGCGAGGGGAAGCCCTCGACCTGACCGTTCTGGATAGCGCGCATG 111116 Query 334221 AGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGA 334280 || || || || || | |||||| | ||||| |||||||| |||| |||||||||||| Sbjct 111115 AGCGTCGACTTTCCGGAACCGTTTCGGCCACAGAGACCGTAACGGTGACCACGCTTCAGA 111056 Query 334281 TTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCA 334340 | | | |||| || ||||| || |||| || ||||| || || | ||| | Sbjct 111055 CGCAGAGTGGCAGTGTTGAGGAGAATCTTGGCACCGTAGGCCAGCGAGAACTGACAGTTG 110996 Query 334341 CACAGATCCTCACC 334354 ||||| |||||||| Sbjct 110995 CACAGGTCCTCACC 110982 >seq41724 Length=31058 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || |||| | |||| ||| ||| | ||| ||| | || ||| Sbjct 25275 ATCATCACTGAGGCCGTTGGCATCGAACAGGCCTTCCTGACCGATGCTCTGCCTTGCTCC 25334 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || || |||||| || | || ||| | || |||||||| | ||| |||||||| | Sbjct 25335 CTCATCGGTATGAACGCTAAGCTGATGTGCCAATACATCGAGTACGTCGCCGACCGACTG 25394 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || || | || || | ||||| ||||| ||| |||||||||| |||||||||| Sbjct 25395 CTCGTCTCCCTCGGCAACGAGAAGCACTACAATGCCACCAACCCCTTTGACTTTATGGAG 25454 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 ||| || || || || || ||||||||||| ||| Sbjct 25455 AACATCAGTCTGCAGGGCAAGACGAACTTCTTCGAGAAG 25493 >seq25376 Length=12287 Score = 100 bits (110), Expect = 6e-16 Identities = 300/455 (66%), Gaps = 10/455 (2%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| ||||| |||| |||| | ||||| || || || | || || ||||||||| Sbjct 9783 TTTGCGGAGCGGATCGTTGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCGGGGAGTTTC 9842 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTAACG 243406 ||| | || |||||||| || ||| | ||||||||| | || ||| | || | Sbjct 9843 TGCTCAATATTTTGGCTAAAAAAGCGAGGGTTAATGCCTGGCTTGACGTTCT--CCAATG 9900 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAAG 243465 | | ||| || ||||||||||| ||| | |||| | || || | || || Sbjct 9901 AACTGATCTCGCGAGACGAGGGCCTCCACTGCGACTTCGC-GTGCCTACTCTACTCGCTT 9959 Query 243466 CTCCAGAACAAGCT-ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 || ||| ||||| | | | | || || || ||| | || || || |||| Sbjct 9960 CTAAGGAAGAAGCTGAGCGA--GGAGCGCGTGAAGGGGATCGTGCGCGACGCGGTGGAAA 10017 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 ||| ||||| ||| | || ||||| | || ||| | | || |||||| || | Sbjct 10018 TCGAGAAGGAGTTCGTGTGTGACGCGCTGCCGTGCGCATTGGTGGGGATGAACGGGGACC 10077 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| | ||||||||||| || || || || | | || |||||| || || | | Sbjct 10078 TTATGAGCCAGTACATCGAGTTTGTGGCTGATAGGCTCTTGGGCGCGCTAGGGTACGGCA 10137 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | |||||||| | |||||| |||| | |||||||| || ||| | || || || | Sbjct 10138 AGGTGTACAATGCTCGGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAGGGTAAGA 10197 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||| ||||| || ||| | ||| | || |||||| Sbjct 10198 CTAATTTCTTTGAGAAGAGGGTCGGAGAGTATCAA 10232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1095081082305250