Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq23651 307 1e-78 seq65591 226 3e-54 seq507837 120 3e-22 >seq23651 Length=24420 Score = 307 bits (340), Expect = 1e-78 Identities = 1099/1703 (65%), Gaps = 34/1703 (2%) Strand=Plus/Plus Query 93726 CTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGA 93785 ||||| ||||| || || |||| ||||||||| || | ||| |||| |||| | || Sbjct 17384 CTTTGGTTTCAAGACCCTCGAGAGGTCGTACCTGCTGAGGATCAATGGACGGGTAGCAGA 17443 Query 93786 GCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAA 93845 |||||| || || |||||||||| ||||| |||| ||||||||| | || || ||| Sbjct 17444 GCGACCACAGCACATGCTGATGCGTGTCGCTGTCGGTATTCACGGCGATGA--TGTCGAG 17501 Query 93846 T--GTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 | | | | | | || ||| || |||| | |||| || | || || Sbjct 17502 TCCGCCATCGAGACCTACAACTTGATGTCCGAGAAGACCTTTACCCACGCTTCGCCTACG 17561 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAG 93963 || |||||| |||| || || ||||| | || ||||| ||| || | | ||| Sbjct 17562 CTCTTCAACTCGGGCACACCCAACCCACAACTTTCGTCGTGCTTCTTGGTCTGCATGAAG 17621 Query 93964 GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATAC 94023 | |||||| ||| ||||| | ||||| || ||| ||||| | ||||| || Sbjct 17622 GACGACTCTATCGAGGGAATCTACGACACGCTGAAGACGTGTGCCATGATCTCCAAGACG 17681 Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 || || || ||||| ||| ||||| || | || || | || || |||||| || Sbjct 17682 GCCGGAGGTATCGGTCTCAACATCCACAACATCCGAGCTACCGGATCATACATCGCAGGA 17741 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||||| || ||||||||| |||| || ||||| || || | ||||||| | || ||| Sbjct 17742 ACCAACGGTGTCTCCAACGGTATCGTACCCATGCTGCGAGTGTACAACAACACTGCTCGC 17801 Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 || || |||||||| || | | | ||| | || || |||| | ||||||||| Sbjct 17802 TATGTCGACCAGGGAGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCCTGG 17861 Query 94204 CACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGG 94263 ||| ||||| | | ||| | |||||||| ||||||||||| || || || | Sbjct 17862 CACTCGGACATCTTTGAGTTCCTGGACCTGCGCAAGAACCACGGAAAGGAGGAGGTCCGA 17921 Query 94264 GCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAA 94323 || | || ||||||||||| |||||| | || ||||| |||||||| || || || | Sbjct 17922 GCTCGTGAGCTCTTCTACGCCCTCTGGATCCCTGACCTGTTTATGAAGCGTGTGGAACAG 17981 Query 94324 AACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGA 94383 || || |||| || | || || || || || || || | || || | ||| Sbjct 17982 AATGGCGACTGGTCACTCATGTGCCCAGCCGAGTGCCCTGGTCTCGCTGAGGTGTACGGA 18041 Query 94384 TCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATG 94443 | || |||| | | || | | ||||| |||||||||||||| || | || Sbjct 18042 GAGGAGTTCGAAGCCCTCTACGAGAGCTACGAGAAGCAGGGCAAGGCCAAGAGGACGATC 18101 Query 94444 GATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTAC 94503 | ||| |||||||||| | || | || | ||| ||||| |||| |||| Sbjct 18102 AAGGCTCAGAAGCTGTGGTACGCTGTCCTCGAGGCTCAGACCGAGACCGGTAACCCCTTT 18161 Query 94504 ATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAG 94563 || ||| |||||| | | |||| |||| ||||||| || ||||||| ||||||| Sbjct 18162 ATGCTGTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGATCAAG 18221 Query 94564 AGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGT 94623 ||||| || || ||||| ||||| ||||||| || | || || ||| | || || || Sbjct 18222 AGCTCCAACCTTTGCACTGAGATCATCGAGTACTCTGCACCTGATGAGGTAGCCGTCTGC 18281 Query 94624 AACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC-ACGTCTACTGCTTC 94682 ||| ||| ||| || ||| | | ||| | | | || | | || ||| ||| Sbjct 18282 AACTTGGCCTCGATTGCCCTCCCTGCCTTCATTGACGCTACCACCAAGGTGTACGACTTT 18341 Query 94683 GTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGT 94742 ||| ||| | | ||| || || || | ||| ||||||| | | Sbjct 18342 AAGCGA-CTGCACGCCGTTGCCAAGGTC---------ATCTGCAAGAATCTGAACAAGAT 18391 Query 94743 AATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCC 94802 ||||| |||| |||||| || || ||||| |||| || ||| | || |||| Sbjct 18392 CATCGATGTCAACTACTACCCGGTGCCCGAGGCCAAGAAGTCCAACTTCCGACACAGGCC 18451 Query 94803 CATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGA 94862 |||||| ||||| |||||||| | || || || | |||| ||| | | |||| || Sbjct 18452 CATCGGTATCGGAATCCAGGGTCTTGCCGATGCTTTCATGATCATGGGCTTCCCCTTTGA 18511 Query 94863 CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT 94922 |||| ||| || | |||| || | || ||||| | ||| || ||| || | Sbjct 18512 TTCTGCCGAGGCCAAGAAGCTGAACGTGCAGATCTTCGAGACCATCTACCACGCCGCACT 18571 Query 94923 GAAACAATCCGTCCA-CTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGAT 94981 | | ||| | | || | ||| |||||||| | |||| | | | || | Sbjct 18572 CGAGCGATCGTGCGAGCTCGCTGAGA-GGGACGGCG---CTTACGAGACCTACGAGGGTT 18627 Query 94982 CGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCT 95039 | || | | | | || | || | ||| | ||||| || | ||||||| || Sbjct 18628 CTCCAGCATCG--CGAGGTGAGCTGCAATATGACATGTGGGGCGTTACCCCCTCGGACCT 18685 Query 95040 GTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTG 95097 | ||||||| |||| | | | || || ||| ||||| || ||| |||| Sbjct 18686 CTGGGACTGGGCTGAGCTGAAGGAGAAGA--TTGCCAAGCACGGCCTGCGCAACTCGCTC 18743 Query 95098 CTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTC 95157 || |||| |||||||| || ||||| ||| | |||||||| ||| |||||||| ||| Sbjct 18744 CTCCTGGCACCCATGCCTACCGCCTCGACGTCTCAGATCCTGGGCTTCAACGAGTGCTTC 18803 Query 95158 GAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATC 95217 || |||| ||| |||||| | |||| | || ||||| || || || || | || | Sbjct 18804 GAGCCCTACACTTCCAACATCTACACGCGCCGTGTGCTTGCTGGAGAGTTTCAGGTGGTG 18863 Query 95218 AACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGTGACAAGGTCAAGA 95275 ||| || || || || ||| ||| | ||| ||||| |||| | |||| Sbjct 18864 AACCCATGGCTGCTGCGTGAACTG--GTCGAGCAAGGTCTGTGGAACGACACCATGAAGA 18921 Query 95276 ACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATC 95334 ||| | | ||| | | || || || |||||| | || || || || ||| Sbjct 18922 ACC-GCATCATCGCACACGGTGGATCGGTTCAGAACGTGCCCGGCATCCCCGACAGGATC 18980 Query 95335 AAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCC 95394 ||| |||||||||||| || |||||||| ||||| || ||||| || ||| Sbjct 18981 AAGAAGCTCTACAAGACTGTCTGGGAGATTTCGCAGAAGACCATCATCGACATGGCTGCC 19040 Query 95395 GCCCGCGGGCCCTTCATCTGCCA 95417 | ||| || |||| ||||| || Sbjct 19041 GACCGTGGTGCCTTTATCTGTCA 19063 >seq65591 Length=6549 Score = 226 bits (250), Expect = 3e-54 Identities = 416/607 (69%), Gaps = 2/607 (0%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | ||||| || ||||| || |||||||||| | || ||| Sbjct 3251 AACTACCAGTACTTCGGTTTCAAGACGTTGGAGCGTTCATACCTCCTCAGACTCGAGGGC 3310 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| ||||| |||| || ||| || | ||||| || || | || || |||||| | Sbjct 3311 AAGGTTGCCGAGAGACCCCAGCAGATGATCATGCGTGTTGCTGTTGGCATCCACGGCGAG 3370 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| | || | | | || ||| | |||| | ||| ||| Sbjct 3371 GACATTGAGGCTGCCATCGAAACATACAACTTGATGTCGCTCAAGTACTTCACCCACGCC 3430 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || || ||||||| ||| || || || ||| ||| | |||| || |||||||| Sbjct 3431 TCGCCTACTCTGTTCAGCGCCGGCACTCCCCAGCCTCAGCTCGCTTCATGCTTCCTGATC 3490 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| || || || || || | ||||| ||||||| ||| || | || Sbjct 3491 GAC-ATGAAGGATGATTCGATTGATGGTATCTACGACACCCTCAAGACCTGCGCCATGAT 3549 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || |||| || || || || ||| | ||| | | ||||||| || || || Sbjct 3550 CTCGAAGAACGCTGGTGGTATTGGTCTCAACGCTCACTGCATTCGTGCCACTGGCTCTTA 3609 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| |||||||| || ||||| ||||| || || || |||||||| ||||||||||| Sbjct 3610 CATCGCTGGTACCAACGGTACCTCGAACGGTCTTGTTCCCATGCTCCGTGTCTTCAACAA 3669 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || | || || ||||||||||| | | | ||| | ||||| |||| || Sbjct 3670 CACTGCCAGATATGTTGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTCGCTATCTACCT 3729 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| || || |||||| ||||||| || |||||||||||||| || Sbjct 3730 CGAGCCTTGGCACGCTGATGTCTTCGCTTTCCTCGACCTCCGCAAGAACCACGGCAAGGA 3789 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | |||||||||||||| |||||| | || || || || ||||| || Sbjct 3790 GGAGGTTCGTGCTCGCGACCTCTTCTACGCCCTCTGGATCCCCGATCTCTTCATGAAGCG 3849 Query 94314 CGTCGAG 94320 || ||| Sbjct 3850 TGTGGAG 3856 Score = 98.7 bits (108), Expect = 1e-15 Identities = 240/359 (67%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 95005 CAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCG 95062 |||| ||| | ||||| || | ||||| | ||| | |||||||| ||||| | | | Sbjct 4530 CAGTACGATATGTGGGGCGTCACTCCCTCCGATCTCTGGGACTGGGAGGCTCTGAAGGAG 4589 Query 95063 CTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCT 95122 ||| ||| | ||||| ||| |||| || || |||||||||||||| ||| Sbjct 4590 AAGATCGC--CAAGGATGGTGTTCGCAACTCGCTACTCGTTGCCCCCATGCCCACTGCCA 4647 Query 95123 CCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACA 95182 || |||||||| | ||| |||||| | ||||| |||| |||||| ||| | ||| Sbjct 4648 GTACCTCGCAGATCATGGGCTTCAACGAATGCTTCGAGCCCTACACCTCTAACATCTACT 4707 Query 95183 ACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCT-ACGGGACCTG 95241 | || || || || || ||||||| || ||||| | || | || | || Sbjct 4708 CTCGTCGTGTCCTTGCTGGTGAATTCCAGGTTGTCAACCCCTGGTTGCTCAAGGATCTTG 4767 Query 95242 ACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCC 95301 || | | ||| ||||| |||||| | ||||||| | | || || || ||| Sbjct 4768 TCGAC-CGTGGTTTGTGGTCTGACAACATGAAGAACCGCATCATCGCCGACAGTGGTTCC 4826 Query 95302 GTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGA 95360 | ||| ||| || | || || || ||| | ||||| |||||||||||||| ||||| Sbjct 4827 ATTCAGCGCATTCCTAACATTCCCGATGACCTGAAGGCTCTCTACAAGACCGTCTGGGA 4885 >seq507837 Length=291 Score = 120 bits (132), Expect = 3e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || |||||||| ||||||||| | || || |||||||| |||| ||||||| | || Sbjct 10 GGAACCAATGGTGTCTCCAACGGAATTGTACCCATGCTCCGAGTCTACAACAACACTGCT 69 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 || ||||| ||||| |||||| | | | ||| | || || |||| ||||||| Sbjct 70 CGATACGTCGACCAAGGTGGTAACAAGCGACCAGGTGCCTTTGCCATCTACGTCGAGCCA 129 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||| ||||| | | ||| |||| || | ||||||||||| || || | Sbjct 130 TGGCACTCGGACATCTTCGAGTTCCTCGATCTCAGGAAGAACCACGGAAAGGAAGAAGTC 189 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGA 94319 | || |||| ||||||||||| |||||| | || || || || ||||| || ||||| Sbjct 190 CGAGCTCGAGAACTCTTCTACGCCCTCTGGATCCCTGATCTCTTCATGAAGCGAGTCGA 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491310135563400