Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq12300 107 1e-18 seq2836 104 2e-17 >seq12300 Length=44855 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| ||||||| | || ||||| ||||| || || ||||| ||||||||||| ||| Sbjct 12834 CCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGGCT 12893 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | || | ||||| || || || ||||| | ||||| | ||| ||||| || Sbjct 12894 AAG-GTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGGG 12952 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| || || ||||| || || || ||| | || || |||||| | | || || Sbjct 12953 AATACCCTCTTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCAAC 13012 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||||||| || |||| || || ||||| || ||||| Sbjct 13013 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 13060 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | || || || ||||| || || ||||| |||||||||||| Sbjct 13290 CCACCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCA 13349 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | ||||| | ||| |||||||| | ||||| | ||| || || ||| Sbjct 13350 AGGGTTCGACCATCTTCGAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 13409 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || ||| || ||| | || || || || | || || Sbjct 13410 ATACCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCAACT 13469 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| |||||||| || || || ||||| ||||| ||||||||| Sbjct 13470 TCCAAGGTTATGGTTTTCCCGGTAAGGGTTTTGACAAAGATTTGCATA 13517 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | || | |||||||||||| || || || || |||||||| Sbjct 12606 CCACCCCGCAAGCGCAGCACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCA 12665 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| | ||||| | || || || || | || | | || ||||| ||| Sbjct 12666 AGGGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 12725 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| || || || ||| | || |||||||| | |||| || Sbjct 12726 ATGCCCTCTTTGTCTTGTATCTTCGCCTTGACATTGTCAATAGTATCCGAACTTTCAACC 12785 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| |||||||| || |||| ||| || |||||||| ||||| Sbjct 12786 TCCAAGGTTATGGTTTTTCCCGTCAAAGTCTTCACAAAAATCTGCAT 12832 >seq2836 Length=35635 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | | ||| || || ||||| || ||||| || ||||||||||| Sbjct 32656 CCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCAGCC 32715 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | | || || || ||||| ||||| | |||| | ||| ||||| || Sbjct 32716 AAAGTACGCCCATCCTCCAACTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGG 32775 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| ||||||| ||| ||| | || || ||||| | || || Sbjct 32776 ATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTATCAATTGTATCAGAGCTCTCGACC 32835 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || |||||||| ||||| || ||||| Sbjct 32836 TCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTGCAT 32882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354988015555775