Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq23076 111 1e-19 seq4858 111 1e-19 seq2836 109 5e-19 seq12300 102 7e-17 seq3985 100 3e-16 seq18120 96.9 3e-15 seq9269 95.1 1e-14 seq8213 86.0 6e-12 >seq23076 Length=20243 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| || || || || ||| || |||| | || || Sbjct 11902 ACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCA 11843 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | |||||||| |||||||| || |||||||| || || || ||| Sbjct 11842 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 11783 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | |||||||||||||||||| |||||||||| || ||| Sbjct 11782 ATCTTAGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGAGTAATGGTCTTG 11723 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || || || ||||| Sbjct 11722 CCGGTGAGCGTCTTAACGAAGATCTGCAT 11694 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || ||||| || || ||||| || || || || || Sbjct 11239 ATACCACCACGAAGACGCAGCACCAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCT 11180 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || || ||| | || | || |||||||| || Sbjct 11179 GATAGAGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGG 11120 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || || | || | |||||||||||| || Sbjct 11119 GGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCGGAAGATTCC 11060 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || ||||| || ||||| || ||||| || ||||| Sbjct 11059 ACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 11010 >seq4858 Length=21104 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || || ||||| || || ||||||||| || || || ||| Sbjct 11873 ACAAGATGCAAGGTCGACTCCTTCTGAATGTTATAATCGGCGAGCGTGCGCCCGTCCTCC 11814 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || ||| | |||| || ||||| ||||| ||||||||||| || ||||| Sbjct 11813 AATTGCTTCCCAGCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGG 11754 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | |||||| || |||||| |||||||| | || || Sbjct 11753 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTT 11695 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||||| ||||| || || || ||||| ||| || Sbjct 11694 CCCGGTTAGGGTTTTGACGAAGATCTGCATGCCGCCAC 11657 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || ||||| ||||| || || ||| Sbjct 11666 ATGCCGCCACGGAGACGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 11607 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | || || || ||| | || | ||| ||||| || || Sbjct 11606 GCGAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGATCGGGA 11547 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||||||||| || || || || || | || | || | ||||||||| ||| Sbjct 11546 GGGATGCCTTCTTTGTCCTGGATCTTGGCCTTTA-CGTTATCGATGGTGTCGGAGCTCTC 11488 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | || || |||||||| ||||| || || || |||||| Sbjct 11487 GACCTCGAGGGTTATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATC 11436 >seq2836 Length=35635 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || ||||| | || | ||| || || || || || ||||| || || ||| Sbjct 31969 ATTCCACCACGAAGCCTGAGAACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCG 32028 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | |||||||| || |||||| | |||||||| || Sbjct 32029 GCCAAAGTCCTGCCATCCTCGAGCTGTTTTCCAGCAAATATCAGCCTCTGCTGGTCGGGT 32088 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||| ||||||||| |||| || | || || || ||| Sbjct 32089 GGAATACCTTCCTTATCCTGAATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTCTCA 32148 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| || ||||| || ||||| || ||||| |||||||| Sbjct 32149 ACTTCGAGAGTAATAGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 32198 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || |||||||||||||| ||||| ||||| | || ||| || Sbjct 31762 ACAAGATGGAGTGTTGATTCCTTTTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCA 31821 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || ||||| | || | | ||||| ||||| ||||| ||||| |||||||| Sbjct 31822 AGTTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTATCTTGG 31881 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||||| || | || ||||| ||| || || || || | || || Sbjct 31882 ATCTTTGCTTTGACATTATCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATAGTCTTT 31941 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || |||||||| ||||| Sbjct 31942 CCAGTAAGAGTCTTCACAAAAATCTGCAT 31970 >seq12300 Length=44855 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || | | || ||| | |||||| || || ||||||||||| || |||||| Sbjct 12831 ATTCCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCG 12890 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || || || || | ||||| | ||||||||||| Sbjct 12891 GCTAAGGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGG 12950 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| ||||| || || || | || | ||| |||||| ||| Sbjct 12951 GGAATACCCTCTTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCA 13010 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | ||||| ||||| || || | || || ||||| || |||||| Sbjct 13011 ACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCATC 13061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | ||| | || || || |||||||||||||| || |||||| Sbjct 13287 ATTCCACCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCG 13346 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | ||| || || || | ||||| | ||||| || || Sbjct 13347 GCAAGGGTTCGACCATCTTCGAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGT 13406 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||| || || || |||| || | |||||| || ||| Sbjct 13407 GGGATACCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCA 13466 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| ||||| || ||||| ||||| |||||||| Sbjct 13467 ACTTCCAAGGTTATGGTTTTCCCGGTAAGGGTTTTGACAAAGATTTGCAT 13516 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | || || ||||||||||||||||| ||||| ||| Sbjct 13515 ATACCACCTCGGAGGCGGAGCACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCG 13574 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | ||| || || || | || || | |||||||| || Sbjct 13575 GCCAAAGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGT 13634 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || |||||||| || ||| | || | |||||||| || Sbjct 13635 GGGATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATCGTGTCGGAGCTTTCC 13694 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || ||||| || ||||| || ||||| || |||||| Sbjct 13695 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAATATCTGCATC 13745 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || ||||| | | ||| | |||| || || ||||| || ||||||||||| Sbjct 13059 ATCCCACCACGGAGTCGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATATTATAATCA 13118 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | || | ||| || | ||| || || || | ||||| | ||||||||||| Sbjct 13119 GCT-AGAGTCCTTCCATCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGG 13177 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 || || || || |||||||| || ||| || | || | ||| || || || Sbjct 13178 GGGGATACCCTCCTTATCTTGGATCTTTGCCTTAACATTATCAATGGTATCAGAGCTTTC 13237 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||||||||| | || || |||||||||||||| Sbjct 13238 AACTTCCAAAGTGATAGTTTTGCCGGTCAAGGTCTTCACAAAAATTTGCAT 13288 >seq3985 Length=92670 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||||| | ||| ||||| || || || ||||| |||||||| || ||| Sbjct 25736 ATGCCTCCCCTCAGCCTAAGCACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCG 25677 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || || ||| | |||| | ||||||||||| Sbjct 25676 GCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGT 25617 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || ||||| || || || || | || | || | |||||| ||| ||| Sbjct 25616 GGGATTCCCTCCTTATCCTGGATCTTGGCCTTTA-CGTTGTCGATGGTGTCTGAACTCTC 25558 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||||||| | || |||||||| || || || || || ||||||||| Sbjct 25557 GACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCATC 25506 >seq18120 Length=99179 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || || | | ||| || || || || || ||||| ||||| || || || Sbjct 92593 TCCTCCTCGCAGACGAAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 92534 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | |||| || || | || || || ||| | |||| ||| |||||||| || || Sbjct 92533 AAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCAGGGGG 92474 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||| || || || || || || || |||| || | || | ||||||||||||||| | Sbjct 92473 AATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCA 92415 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| || | ||| || || || || || || ||||| ||||||||| Sbjct 92414 CCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACAAAGATTTGCATC 92365 >seq9269 Length=22462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| |||||||| ||||| ||||| ||||| || || ||| Sbjct 15055 CCTCCACGAAGGCGAAGCACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCC 14996 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | |||||||| ||| | || | || ||||||||||| ||| Sbjct 14995 AAAGTCCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGA 14936 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || ||||| || || || | || | |||||| || |||||||| Sbjct 14935 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTGTCGATGGTGTCAGATGACTCGACC 14876 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || ||||| || || || || || || || ||||| Sbjct 14875 TCTAGGGTTATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 14829 >seq8213 Length=36447 Score = 86.0 bits (94), Expect = 6e-12 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 45103 TTTATTTTA-TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 ||||| || ||||||| | |||||||| ||||| || || || || ||||||||||| Sbjct 19210 TTTATCATAGTTCCTCCCCTAAGCCTCAAAACTAGGTGAAGTGTCGACTCCTTTTGGATG 19269 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 || ||||| | ||| | ||| |||||||| || || || | |||| || ||| Sbjct 19270 TTGTAATCAGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGC 19329 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAAT 45253 ||||| || || || ||||| || || ||||| Sbjct 19330 TGGTCTGGAGGGATACCTTCCTTGTCCTGAAT 19361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448884858173400