Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq862 154 2e-32 seq7860 145 9e-30 seq345864 93.3 5e-14 seq524375 91.5 2e-13 seq7807 89.7 6e-13 seq13424 87.8 2e-12 >seq862 Length=327473 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 6497 ACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGA 6556 ||||| | |||||||||||||| |||| | |||||| || | || |||||||| || Sbjct 255342 ACAAAAAACATAAAGAAATGTAACCAATGTTTATTGGAAAAAGTAATCCCAAAGATTTGG 255283 Query 6557 GACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAAC 6616 ||||| || || |||| |||||||| ||||| || || || |||| || || | || Sbjct 255282 GACCAAAAGCGGTTAGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGTTAATA 255223 Query 6617 GCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCG 6676 || | ||| ||||||| |||||||||||||| |||||||| |||| |||||||| Sbjct 255222 GCATGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTATGGTAGCACCA 255163 Query 6677 TGAATAGCACAGAGCAATGCTCCACCTAAGATACC 6711 ||||||||||| |||| || |||| || | ||| Sbjct 255162 TGAATAGCACATAGCAGAGCAGCACCCAATACACC 255128 >seq7860 Length=10955 Score = 145 bits (160), Expect = 9e-30 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 6792 CAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGA 6851 |||||||||| |||||||||||||||| ||||| || || ||||| || | || | Sbjct 6481 CAACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAAGAATA 6540 Query 6852 CAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGA 6911 |||| ||||| |||||||| ||| |||| || ||||||||||| || || || | | || Sbjct 6541 CAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGA 6599 Query 6912 CTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGG 6970 ||| || || | ||||| || || | |||||||||||| || |||| || |||||| Sbjct 6600 ACAGATCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCGTGG 6659 Query 6971 AGCGCCACAAAAGGCCATAGTCCCCCAAGTTG 7002 || || ||||||| ||| || || || | ||| Sbjct 6660 AGAGCAACAAAAGTCCACAGACCGCCTAATTG 6691 >seq345864 Length=152 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 ||||| || | || | ||||| | ||| || |||||||||||||| || ||||| || Sbjct 151 GCACAAAGAAGAGCAGCTCCTAATACACCAGCCACACCCATCATATGGAAAGGGTTTAGT 92 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 |||||||| ||||| || || | || | | ||| ||||| || |||||||| ||||| Sbjct 91 GTCCAGTTATGGAAACCTTGGAAAAACAAAATGAAACGGAAGATTGCTGCAACTCCAAAA 32 Query 6803 GACGGCGCAAAGAACCAAC 6821 || ||||| ||||||| Sbjct 31 CTTGGAGCAAAAAACCAAC 13 >seq524375 Length=364 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 8360 GAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCG 8419 || |||| || || |||||||| || || |||||||||||||||||||||| ||| || Sbjct 356 GAGCCAGAAACAGGCTCACGGATACCATCGATGTCCACAGGAGGAGCAGCGATGAAGGCA 297 Query 8420 ACGATGAAACAAATA-GCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACC 8478 | || ||||| | | |||| | || ||||| ||||| || ||||| |||||||| Sbjct 296 ATAAT-AAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAACCAACC 238 Query 8479 GACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || || || || || | ||| ||| ||||| | ||||| Sbjct 237 GATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 196 >seq7807 Length=112412 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/131 (76%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 6613 AAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGC 6672 ||| || | ||| ||||||| |||||||||||||| |||||||| |||| ||||| Sbjct 47366 AAAAGCATGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTATGGTAGC 47425 Query 6673 ACCGTGAATAGC-----ACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATA 6727 |||||||||||| ||||||| || || || | ||| || | |||||||||| Sbjct 47426 ACCGTGAATAGCGCATGGCAGAGCAGAGCAGTGCCCAATACACCGGC-AAACCCATCATA 47484 Query 6728 TGAAACGGGTT 6738 ||||| ||||| Sbjct 47485 TGAAATGGGTT 47495 >seq13424 Length=38927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7689 CCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGA 7748 |||| ||||| | ||| | ||| ||||||||||| || || || ||||| || || |||| Sbjct 6224 CCATAGTGCTGATACCTAAAGCGGTGAACCAGATACCTACTACAGGCCAAGCCGCTAGGA 6283 Query 7749 AGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCA 7796 |||| || | ||||| || || ||||| ||| ||||||||||||| Sbjct 6284 AGAAATGTAAAGAACGAGAATTATTGAAACTAGCATATTGGAAGATCA 6331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617832799887600