Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq25376 179 6e-40 seq2580 161 2e-34 seq23651 149 1e-30 seq58770 138 2e-27 seq54061 93.3 7e-14 seq483522 86.0 1e-11 >seq25376 Length=12287 Score = 179 bits (198), Expect = 6e-40 Identities = 492/742 (66%), Gaps = 35/742 (5%) Strand=Plus/Minus Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-C 159809 ||| || |||||||| |||||||| | ||| | || | ||| ||||||| || | Sbjct 10112 CCTATCAGCCACAAACTCGATGTACTGGCTCATAAGGTCCCCGTTCATCCCCACCAATGC 10053 Query 159810 TAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869 |||| ||||| || ||| ||||||||||| || || ||||| ||| ||| ||| Sbjct 10052 GCACGGC-AGCGCGTCACACACGAACTCCTTCTCGATTTCCACCGCGTCGCGCACGATCC 9994 Query 159870 GCGAGACACGTTCGTACCCCGGCTTG--CCCAAAATGTG-GTCCTTAAACAGGAGGCACG 159926 | || || || | | | |||| || | | | | || | || ||||||| Sbjct 9993 CCTTCACGCGCTCCTCGCTCAGCTTCTTCCTTAGAAGCGAGT------AGAGTAGGCACG 9940 Query 159927 CAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCG 159986 | ||||||||||| || |||||||| || ||||| | || ||||| | | | ||| | Sbjct 9939 CGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAGCCAG 9880 Query 159987 GCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATC 160045 |||| | ||| ||| ||| |||||||| || | ||| || | || | | || |||||| Sbjct 9879 GCATTAACCCTCGCTTTTTTAGCCAAAATATTG-AGCAGAAACTCCCCGAGAAGAAGATC 9821 Query 160046 CCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC 160105 ||||| ||| || || || |||| || ||| ||| ||| | || | | | | || Sbjct 9820 CCCTCGACGCAAGCGAAGGCAACGATCCGCTCCGCAA---AGGTCTCGGAGCCGTCGATC 9764 Query 160106 CACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAAC 160165 || | |||||| | |||||| || || | ||| || | | ||||| |||| ||| Sbjct 9763 CAGCGGAGGGCCCACTGAGCCTTTTTGGCCACGCAAGGGACGGTCTCGATTGCGTGGAAC 9704 Query 160166 AATCTGTCCTGCTCCTTCACATCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACAT 160221 | | || || ||| | ||||||||| || ||||| ||| |||||| Sbjct 9703 AGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCT----GTACAT 9648 Query 160222 TTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGC---CTCCAG 160278 || | ||| | || || ||||| ||||| ||| ||||| | ||| || | | Sbjct 9647 CTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAA----GGCGCGTGCTTCGG 9592 Query 160279 ATA-CTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGG 160337 | ||| ||||||| |||| | ||||| || | ||| | ||||||| || Sbjct 9591 CGACCTGGACCTCCTTCATGAAGCGGCCGCCCAGGTTCTCCAAAACGATGCCGTCGGAGG 9532 Query 160338 CCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTT 160397 | || ||||| || | |||||| | |||||| || | |||||| | | || |||| Sbjct 9531 CGGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGGCGCTCGTCGGGGGTTAG---GTTTT 9475 Query 160398 CCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAG 160457 ||||||| | ||| |||| | ||||||||| |||||| |||| || ||||| | Sbjct 9474 CCCAGTGGCGGAGGTCCTGGGAGAGATCAACCTCCTCCGCGGTCCAGAAGGAAGCCTCGG 9415 Query 160458 CAGTTTTGTACATGGCCCAGAT 160479 | | |||||||| ||||||| Sbjct 9414 CCTTCTTGTACATTTCCCAGAT 9393 >seq2580 Length=28588 Score = 161 bits (178), Expect = 2e-34 Identities = 488/742 (66%), Gaps = 35/742 (5%) Strand=Plus/Minus Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-C 159809 ||| || |||||||| ||||| || | ||| | || | ||| ||||||| |||| | Sbjct 12233 CCTATCAGCCACAAACTCGATATACTGGCTCATTAGGTCCCCGTTCATCCCCACCAGCGC 12174 Query 159810 TAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869 |||| ||||| || | | |||||||||||| || || ||||| ||| || ||| Sbjct 12173 GCACGGC-AGCGCGTCGCAAACAAACTCCTTCTCGATGTCCACCGCGTCGCGGACGATCC 12115 Query 159870 GCGAGACACGTTCGTACCCCGGCTTG--CCCAAAATGTG-GTCCTTAAACAGGAGGCACG 159926 | || || || | | | |||| || | | | | || | || ||||||| Sbjct 12114 CCTTCACGCGCTCCTCGCTCAGCTTCTTCCTTAGAAGCGAGT------AGAGTAGGCACG 12061 Query 159927 CAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCG 159986 | ||||||||||| || |||||||| || ||||| | || ||||| | | | ||| | Sbjct 12060 CGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAGCCAG 12001 Query 159987 GCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATC 160045 |||| | ||| ||| ||| |||||||| || | ||| || | || | | || |||||| Sbjct 12000 GCATTAACCCTCGCTTTTTTAGCCAAAATATTG-AGCAGAAACTCCCCGAGAAGAAGATC 11942 Query 160046 CCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC 160105 ||||| ||| ||| || || |||| || ||| ||| ||| | || | ||| | || Sbjct 11941 CCCTCGACGCACGCGAAGGCAACGATCCGCTCCGCAA---AGGACTCGGAGCCATCGATC 11885 Query 160106 CACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAAC 160165 || | |||||| | |||||||| || | ||| || ||| ||||| |||| ||| Sbjct 11884 CAGCGGAGGGCCCACTGCGCCTTCTTGGCCACGCAAGGGATGGTCTCGATCGCGTGGAAC 11825 Query 160166 AATCTGTCCTGCTCCTTCACATCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACAT 160221 | | || || ||| | ||||||||| || ||||| ||| |||||| Sbjct 11824 AGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCT----GTACAT 11769 Query 160222 TTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGC---CTCCAG 160278 || | ||| | || || ||||| ||||| ||| ||||| | ||| || | | Sbjct 11768 CTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAA----GGCGCGTGCTTCGG 11713 Query 160279 ATA-CTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGG 160337 | ||| ||||||| |||| | ||||| || | ||| | ||||||| || Sbjct 11712 CGACCTGGACCTCCTTCATGAAGCGGCCGCCCAGGTTCTCCAAAACGATGCCGTCGGAGG 11653 Query 160338 CCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTT 160397 | || ||||| || | |||||| | |||||| || | |||||| | | || || Sbjct 11652 CGGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGGCGCTCGTCGGGGGTCAG---GGCTT 11596 Query 160398 CCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAG 160457 |||| || | ||| |||| | || ||||| || ||| |||| || |||| | Sbjct 11595 CCCAATGACGCTGGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 11536 Query 160458 CAGTTTTGTACATGGCCCAGAT 160479 | | |||||||| ||||||| Sbjct 11535 CCTTCTTGTACATTTCCCAGAT 11514 >seq23651 Length=24420 Score = 149 bits (164), Expect = 1e-30 Identities = 335/492 (68%), Gaps = 16/492 (3%) Strand=Plus/Minus Query 203846 ACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTT 203905 || ||||||||||||||||| | ||||| | | | | ||| ||||| || || ||||| Sbjct 19207 ACGGTGAACTGAATGGCGTTGGCAGCAGGTCGGGTACGCAGGTAGTAGATACCAGTCTTG 19148 Query 203906 AGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCC 203965 || || || ||| ||||| | |||||| || | ||| | | | | |||| | | Sbjct 19147 AGTCCTCGCTTCCAGCCGTAGAAGTGCATCGAGGTCAGCTGACCAAAGGTGGGAGCCGAA 19088 Query 203966 ATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATT 204024 | ||| ||||| || ||||| ||| ||| |||||| || || || || ||||| | Sbjct 19087 AGGTGGATGTTGAGCGACTGTGATTGACAGAT-AAAGGCACCACGGTCGGCAGCCATGTC 19029 Query 204025 GATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGT-GTGTTGA 204082 ||| ||||||||||||||||||||||| || |||||| | | | ||| || | ||| | Sbjct 19028 GATGATGGTCTTCTGCGAAATCTCCCAGACAGTCTTGTAGAGCTTCT-TGATCCTGTCGG 18970 Query 204083 GGCACAT-CTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCA---GTCTCATCCTCG 204137 || || | ||||| ||| | ||| || || || || | | || || | | Sbjct 18969 GG---ATGCCGGGCACGTTCTGAACCGATCCACCGTGTGCGATGATGCGGTTCTTCATGG 18913 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197 | || | ||||| || | || ||| || |||| ||| ||||| | | || Sbjct 18912 TGTCGT---TCCACAGACCTTGCTCGACCAGTTCACGCAGCAGCCATGGGTTCACCACCT 18856 Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257 |||| ||||| | ||||| | || ||| | | |||| ||| | || ||||| || Sbjct 18855 GAAACTCTCCAGCAAGCACACGGCGCGTGTAGATGTTGGAAGTGTAGGGCTCGAAGCACT 18796 Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317 ||||| ||| | ||||||| || ||| || |||||||| |||||||| || |||| Sbjct 18795 CGTTGAAGCCCAGGATCTGAGACGTCGAGGCGGTAGGCATGGGTGCCAGGAGGAGCGAGT 18736 Query 204318 TGCGCACACCGT 204329 |||||| |||| Sbjct 18735 TGCGCAGGCCGT 18724 Score = 136 bits (150), Expect = 6e-27 Identities = 396/605 (65%), Gaps = 10/605 (2%) Strand=Plus/Minus Query 205156 TTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCT 205215 || ||| | || |||||||||||| |||||| ||| |||| || || ||||| || | Sbjct 17978 TTCCACACGCTTCATAAACAGGTCAGGGATCCAGAGGGCGTAGAAGAGCTCACGAGCTCG 17919 Query 205216 AATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCA 205275 | | || | ||| ||||||| || |||||| | | ||||| | |||||| Sbjct 17918 GACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAACTCAAAGATGTCCGAGTGCCA 17859 Query 205276 CGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCG 205335 ||||| | | | ||| | || || || | |||||| || |||||||| || ||| Sbjct 17858 GGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCTCCCTGGTCGACATAGCG 17799 Query 205336 AGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCT 205395 || | |||| | ||||||||||| || || | |||||||| | ||||| || | Sbjct 17798 AGCAGTGTTGTTGTACACTCGCAGCATGGGTACGATACCGTTGGAGACACCGTTGGTTCC 17739 Query 205396 GTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACA 205455 |||| || || ||| | | |||| |||| || || || || | Sbjct 17738 TGCGATGTATGATCCGGTAGCTCGGATGTTGTGGATGTTGAGACCGATACCTCCGGCCGT 17679 Query 205456 CTTGGCGATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCG 205514 ||||| |||| ||| ||| |||| ||| ||| |||||| || |||| || |||||| Sbjct 17678 CTTGGAGATCATGGCACACGTCTT-CAGCGTGTCGTAGATTCCCTCGATAGAGTCGTCCT 17620 Query 205515 CCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGCAAAGTTG---GTGCCCGCGTGGAAG 205570 || |||| ||||||| | || | ||| |||| ||||||| || |||| Sbjct 17619 TCATGCAGACCAAGAAGCACGACGAAAGTTGTGG----GTTGGGTGTGCCCGAGTTGAAG 17564 Query 205571 AGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACG 205630 ||||| || |||||| | ||| ||||||| || | |||||||||| | || Sbjct 17563 AGCGTAGGCGAAGCGTGGGTAAAGGTCTTCTCGGACATCAAGTTGTAGGTCTCGATGGCG 17504 Query 205631 CTCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTC 205690 ||| | ||| |||||||||||| | |||| | ||| | | ||| || |||| | Sbjct 17503 GACTCGACATCATCGCCGTGAATACCGACAGCGACACGCATCAGCATGTGCTGTGGTCGC 17444 Query 205691 TCCATCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAA 205750 || |||| | || | | | ||||| || | ||||| ||||| || |||| Sbjct 17443 TCTGCTACCCGTCCATTGATCCTCAGCAGGTACGACCTCTCGAGGGTCTTGAAACCAAAG 17384 Query 205751 AAGTT 205755 ||||| Sbjct 17383 AAGTT 17379 >seq58770 Length=9062 Score = 138 bits (152), Expect = 2e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 |||| ||||||||||||||||| ||||| || | | ||||| |||||||| || ||| Sbjct 4847 TCCAGAGTGAACTGAATGGCGTTAACGGCCGGTCGAGTCCTCAGGTAGTACATTCCAGTC 4906 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || || ||||||| ||||||||| | ||||||||||| || | | || | |||| | Sbjct 4907 TTGAGACCCTTCTTCCACCCGTAAAAGTGCATGGAAGTCAACTGTCCCATGGAAGGGTTG 4966 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021 | || ||||| ||||| ||||| |||||||| |||||| || ||||| || || | Sbjct 4967 GTCAAGTGAACGTTCAAGGACTGAGACTGGTCGAT-AAAGGCACCACGATCGGCAGCGAG 5025 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | ||| | | |||||| |||||||| || |||||| Sbjct 5026 GTCGATGACAGCCTTCTGACTGATCTCCCAGACGGTCTTG 5065 >seq54061 Length=1074 Score = 93.3 bits (102), Expect = 7e-14 Identities = 153/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 203846 ACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTT 203905 || ||||| || ||||| || | ||||| | | ||| || ||||| | || ||||| Sbjct 362 ACAGTGAATTGGATGGCATTGGCTGCAGGTCGGGTTCGAAGGTAGTAGACACCCGTCTTC 303 Query 203906 AGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCC 203965 | || || ||| || || | |||||| || | ||| | | | | |||| | | Sbjct 302 AATCCTCGCTTCCATCCATAGA-GTGCATCGAGGTCAGCTGACCAAAGGTGGGAGCCGAA 244 Query 203966 ATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATT 204024 | ||| ||||| || ||||| ||| ||| |||||| || || || || ||||| | Sbjct 243 AGGTGGATGTTGAGCGACTGTGATTGACAGAT-AAAGGCACCACGGTCGGCAGCCATGTC 185 Query 204025 GATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 ||| ||||||||||||||||||||||| || |||||| Sbjct 184 GATGATGGTCTTCTGCGAAATCTCCCAGACAGTCTTG 148 >seq483522 Length=241 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 204185 GGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAAT 204244 ||||||| || ||| || || || | || || | || | | | | |||| ||||| | Sbjct 187 GGGTTGACGACCTGGAACTCACCAGCAAGGACACGGCGAGAGTAAATGTTGCTGGTGTAG 128 Query 204245 GGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCC 204304 || ||||| ||||||| ||| | ||||| | ||| ||||| || ||||||||||| Sbjct 127 GGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTACTGGCAGTAGGCATGGGAGCA 68 Query 204305 AGGAGCAGGGAGTTGCGCACACCGT 204329 | ||| || |||||||| ||||||| Sbjct 67 ACGAGAAGAGAGTTGCGAACACCGT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 789669473972400