Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2836 125 5e-24 seq12300 98.7 7e-16 seq4858 93.3 3e-14 seq538179 89.7 4e-13 seq10457 82.4 5e-11 >seq2836 Length=35635 Score = 125 bits (138), Expect = 5e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||||||||| ||| ||||| || || || || || |||||| || || Sbjct 32212 CGGAGGACCAAATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTTCGACCA 32271 Query 39565 TCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 || || | ||| ||||||| |||| || || | ||||||||| | || | || ||||| Sbjct 32272 TCCTCAAGTTGCTTTCCCG-CAAAGATCAATCTCTGCTGATCTGGAGGAATACCCTCTTT 32330 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| ||| ||| ||| | | | | |||||||| |||||| || |||||||| || Sbjct 32331 GTCTTGTATCTTTGCTTTGACATTATCGATTGTGTCTGAGCTTTCAACTTCCAAAGTGAT 32390 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| ||||| || | |||||| || ||||||||||| Sbjct 32391 TGTCTTACCTGTAAGAGTTTTAACAAAGATCTGCAT 32426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| |||||| || ||||| || | ||| |||||| || || || |||| Sbjct 32652 CATC-CCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAAT 32710 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||||| || |||| ||||| ||||| || |||| || | | |||||| || | Sbjct 32711 CAGCCAAAGTACGCCCATCCTCCAACTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCTG 32770 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | || || ||||| ||||| ||| | | | | ||| || | ||| | Sbjct 32771 GAGGGATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTATCAATTGTATCAGAGCTCT 32830 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | ||| || || || || || | |||||| || ||||||||||| Sbjct 32831 CGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTGCAT 32882 >seq12300 Length=44855 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| ||||| |||||||||| || || ||||| || || |||||||| Sbjct 12834 CCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGGCT 12893 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| ||||| || || || ||||||| || | |||||| |||| ||| Sbjct 12894 AAGGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGGGA 12953 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || |||| | | | || || | || || || Sbjct 12954 ATACCCTCTTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCAACC 13013 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| ||||| || || || || || || || |||||||| Sbjct 13014 TCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 13060 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| ||||| ||| || || || ||||||||||| || | | | | || Sbjct 13074 CGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATATTATAATCAGCTAGAGTCCTTCCA 13133 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||| ||||| ||||||| || | |||||| |||| ||| | || || || Sbjct 13134 TCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGGATACCCTCCTTA 13193 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || ||| |||| | | | || || | |||||| || |||||||| || Sbjct 13194 TCTTGGATCTTTGCCTTAACATTATCAATGGTATCAGAGCTTTCAACTTCCAAAGTGATA 13253 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || || || ||||| Sbjct 13254 GTTTTGCCGGTCAAGGTCTTCACAAAAATTTGCAT 13288 >seq4858 Length=21104 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| || || || | |||||| || || || || || ||||||| Sbjct 11895 CATC-CCACCCCTCAATCGGAGGACAAGATGCAAGGTCGACTCCTTCTGAATGTTATAAT 11837 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | ||| | || |||||||| ||||| | || || | ||||||||||||| Sbjct 11836 CGGCGAGCGTGCGCCCGTCCTCCAATTGCTTCCCAGCGAAGATCAGGCGCTGCTGATCCG 11777 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | |||||| ||||| || || || | ||| | | | ||||| | ||| Sbjct 11776 GAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC 11718 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || || || | ||| || || || || |||| ||||| ||||||||||||||| || Sbjct 11717 TCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCATGCCG 11661 >seq538179 Length=533 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| ||| || || |||| ||||||||| || || || || || || | Sbjct 366 CATC-CCTCCTCTCAATCGGAGGACCAGATGCAAAGTCGACTCCTTCTGAATGTTGTAGT 308 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | ||| | || |||||||| |||||| | || || | | |||||| |||| Sbjct 307 CGGCGAGCGTGCGACCGTCCTCCAATTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCG 248 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACT-GTGTCTGCGCTT 39666 || | ||||| ||||| || || || | ||| | | | || || | ||| Sbjct 247 GAGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATCGTATCGGAGCTC 189 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| || || || || || |||| |||||| |||||||||||||| Sbjct 188 TCTACCTCCAAGGTTATCGTCTTCCCGGTTAGAGTTTTGACGAAGATCTGCAT 136 >seq10457 Length=19256 Score = 82.4 bits (90), Expect = 5e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 39562 TCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCT 39621 || || |||||||| |||||| | || || || ||||||||||||| || | ||||| Sbjct 4045 TCGTCCTCCAATTGCTTCCCGGCGAAGATCAATCGCTGCTGATCCGGAGGGATCCCTTCC 3986 Query 39622 TTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGT 39680 ||||| || || ||| | ||| | | | ||||| | ||| || || || | || Sbjct 3985 TTGTCTTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGT 3927 Query 39681 AATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| ||||| |||||||||||||| Sbjct 3926 GATGGTCTTCCCGGTTAAGGTTTTGACGAAGATCTGCAT 3888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345033030869195