Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq7860 143 3e-29 seq862 127 2e-24 seq524375 125 9e-24 seq4549 125 9e-24 seq345864 100 3e-16 seq5622 87.8 2e-12 >seq7860 Length=10955 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 181697 CAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTT 181756 ||| | || || || ||| ||||||| || |||||||| || || | || || ||||| Sbjct 6691 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTC 6632 Query 181757 ATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGC 181815 ||| | | ||||||||||||||||| ||| || | | ||||| || ||||| || || Sbjct 6631 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCA-ATTGCGACCTTATAATGCAATCGC 6573 Query 181816 TTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATC 181875 || || | ||| |||||||| || || |||||||| | || ||||| || || || || Sbjct 6572 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTC 6513 Query 181876 CAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGC 181911 |||||||||||||||| ||||| ||||| | ||| Sbjct 6512 TGGTTGGTTCTTTGCGCCTAGTTTTGGTGTTGGGGC 6477 >seq862 Length=327473 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 181995 TGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAG 182054 |||||| || | || | ||| ||||| |||| ||| | || |||||| | | | ||| Sbjct 255135 TGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAG 255194 Query 182055 ACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATT 182114 | ||||| |||||||| ||| | || | | ||||||||| |||||||| |||| Sbjct 255195 ATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATT 255254 Query 182115 CAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGA 182174 ||||||| || | |||||||| ||||| || ||||| || ||| | ||| |||||| Sbjct 255255 CAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAAC 255314 Query 182175 GGTGGTTGCATTTCTTTATGCTCTTTGT 182202 ||||| |||||||||||| | ||||| Sbjct 255315 ATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq524375 Length=364 Score = 125 bits (138), Expect = 9e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 179747 CTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCT 179806 ||||||||| ||||| ||| || | |||||||| || |||||||||| || ||||| Sbjct 195 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 254 Query 179807 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || || || ||| | ||||| | || || | ||||||||||||||||| Sbjct 255 AATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCC 314 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTC 179908 ||||||||||||||||| |||||||| || || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq4549 Length=62305 Score = 125 bits (138), Expect = 9e-24 Identities = 183/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 182066 GCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACA 182125 |||||||| ||| || || | |||||||| || |||| ||||||||||| || Sbjct 53445 GCAAATACATTCCGTGCTTTTAACATAACTCAAGCTAAATAAACTTATTCAATGGTCACC 53386 Query 182126 GCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCAT 182185 || |||| ||| ||||| || ||||| | |||| ||| | |||| | ||||| || Sbjct 53385 GCTAACCACTTTTGGTCCCAAATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACAC 53326 Query 182186 TTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGT 182245 |||||||| | ||||| || | | ||| | || | || | | || || ||||| Sbjct 53325 TTCTTTATATTATTTGTACCAATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGT 53266 Query 182246 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGAC 182305 || |||| ||||| ||||| |||||||| | | ||||||||| | ||| || |||| Sbjct 53265 CTACCTCTGAACCTACGTGCCTATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGAT 53206 Query 182306 CCAGAGTTCGAGACGTTCT 182324 || || || ||||| |||| Sbjct 53205 CCTGAATTTGAGACTTTCT 53187 >seq345864 Length=152 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 181868 GGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTT 181927 || ||||| ||||||| ||||| || ||||| || || || || || ||||| ||| || Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 181928 CTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCT 181987 | || |||| || || ||||| ||||| || || || ||||||||||||||||| ||| Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 181988 GGT 181990 ||| Sbjct 123 GGT 125 >seq5622 Length=97820 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 182309 GAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTA 182368 || || ||||| |||||||| || || | ||| || ||||||||| | |||| ||| | Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 182369 GCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGT 182428 ||| | |||||||| ||||| ||| || | ||||||||||| || ||||| | || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 182429 AACGCACT 182436 ||||| || Sbjct 54854 AACGCTCT 54847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606185710626600