Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq31749 105 8e-18 seq54748 100 3e-16 seq7860 95.1 1e-14 seq2941 93.3 5e-14 seq31735 86.0 7e-12 seq493674 84.2 3e-11 >seq31749 Length=37690 Score = 105 bits (116), Expect = 8e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 153772 GGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACA 153831 ||||||| ||||| ||||| ||||| || || |||||||||||||| | |||| Sbjct 10802 GGTTTGGAGTTCCTCCTGGATACGGAGGACCCCACGCTGCATTCTTTGCTGTCTCCGACA 10861 Query 153832 AGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATA 153891 || ||| | ||||| || ||| | | || |||| | |||| | || || Sbjct 10862 AGCTCAAGCGCAAGATCCCGGGCCGTCTCGTCGGTCTGAGCAAAGATCAGCAGGGCAAGC 10921 Query 153892 AAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCA 153951 ||| ||| || | || || ||||||||||||||||| ||| ||||||| || || || Sbjct 10922 CAGCCTACCGACTTGCTCTGCAGACTAGAGAGCAGCACATCCGGAGAGAGAAGGCTACGT 10981 Query 153952 GTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATG 153989 |||||||| || || ||||| ||| |||| || ||| Sbjct 10982 CAAACATCTGTACTGCCCAGGCCCTGTTGGCAAACATG 11019 >seq54748 Length=1350 Score = 100 bits (110), Expect = 3e-16 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 154872 ATTATGATTACATACCCATCTA-CACAT--GGTGTATTTGAAACTAACATTAGACAGATA 154928 || ||||| |||||||| || ||| | ||||| |||||| |||| | | || Sbjct 586 ATCATGATCACATACCC---TAGCACTTTCGGTGTGTTTGAACCTAAGGTCAAGGAGGCC 530 Query 154929 TGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCA 154988 || | | ||||| | |||||||||||||| || | || || || || | || || Sbjct 529 TGCGATCTTGTTCACAAGAATGGTGGTCAGGTCTACATGGACGGTGCCAACATGAACGCT 470 Query 154989 CAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACAT 155048 ||| | || || || |||| |||||| ||||| || ||| | ||| | || Sbjct 469 CAGATTGGTCTTTGCTCTCCTGGTGAAATTGGTGCCGATGTCTGCCATTTGAACCTTCAC 410 Query 155049 AAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCA 155108 || || ||||||||||| || || ||||| |||||||| || |||||||| ||||| ||| Sbjct 409 AAGACCTTCTGTATTCCTCACGGTGGTGGTGGTCCTGGTGTCGGTCCTATTGGTGTCGCA 350 Query 155109 AAACATCTCACACCATT 155125 | || ||| | || || Sbjct 349 GAGCACCTCGCTCCTTT 333 >seq7860 Length=10955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 170792 TCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACT 170851 |||||||| ||| | || ||| | |||| ||||| || | || || | |||||||| Sbjct 6701 TCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACT 6642 Query 170852 CATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAA 170911 |||||||||||| | | |||||||| | || || ||| | ||||||| || Sbjct 6641 AATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAA 6582 Query 170912 CGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACT 170971 ||| |||||||||||||| || || || || | | || |||| |||||||| Sbjct 6581 TGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACT 6522 Query 170972 AGGTCAGCACAGTTGGTTCTTCGCACC 170998 ||||||| |||||||||| || || Sbjct 6521 AGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq2941 Length=104135 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || || || || ||||| || | |||||||||||||| |||||||||||||| || Sbjct 54092 TGGAGCGGACGTTTGCCATCTCAATCTCCATAAAACATTCTGCATTCCACATGGAGGAGG 54151 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 ||||||||| | |||||||| ||||| ||||| | |||||||| Sbjct 54152 TGGTCCTGGCATGGGTCCTATTGGTGTGAAGAAACACTTAGCACCATTT 54200 >seq31735 Length=860 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 153242 AGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCA 153301 |||||| || |||| || || ||||| ||| | ||||||||| ||||||||| || || Sbjct 499 AGTCATTAAGAGAAATGTCCTCGAGAACCCTGGCTGGTACACAAGTTACACTCCATACCA 440 Query 153302 AGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGA 153361 | ||||||| ||||||||||||||| | | |||| | ||| || | | || Sbjct 439 ACCTGAGATTAGTCAGGGAAGATTGGAGTCCCTGCTCAACTTCCAGACCATGGAATCTGA 380 Query 153362 ACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGA 153421 || || || | | || ||||||||||| | | ||||| | || || || ||||| Sbjct 379 CCTGACCGGCCTGGCCATCTCAAACGCATCTGTCCTCGATGAGCCCACCGCTGCTGCAGA 320 Query 153422 AGCAATG 153428 || ||| Sbjct 319 GGCCATG 313 >seq493674 Length=257 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 153894 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGT 153953 || ||| |||| || || |||||| |||||||||||||| | ||||| || || || Sbjct 33 GCCTACCGATTGGCTCTTCAGACTCGAGAGCAGCATATCCGAAGAGAAAAGGCTACTTCC 92 Query 153954 AACATCTGCACAGCTCAGGCACTGCTGGCTAATATG 153989 |||||||| || |||||||| || ||||||||||| Sbjct 93 AACATCTGTACTGCTCAGGCTCTATTGGCTAATATG 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575216847093600