Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq7860 131 2e-25 seq524375 114 1e-20 seq4549 113 5e-20 seq5622 105 8e-18 seq345864 91.5 2e-13 seq214152 89.7 6e-13 seq13424 86.0 7e-12 >seq7860 Length=10955 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 169555 ACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCA 169614 || ||| ||||| ||| ||||||||||| || ||||| |||| ||||| || || || Sbjct 6716 ACTAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCA 6657 Query 169615 TGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGG 169674 || || |||| | | || ||||||||| | | || |||||| | || || | || Sbjct 6656 CGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCA 6597 Query 169675 CATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTT 169734 | || ||||||||||| || |||||||||| ||| |||||||| ||||| ||| || Sbjct 6596 ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 6537 Query 169735 TCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCC 169776 | || || ||||| || ||||| ||||||||||| || Sbjct 6536 CTTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq524375 Length=364 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 |||||||| ||||| || ||| | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || || ||| | ||||| | ||||| || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 168023 |||||||||||||| || |||||||| || || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq4549 Length=62305 Score = 113 bits (124), Expect = 5e-20 Identities = 204/298 (68%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 169913 ACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGG---CAAATACTTTCAAGGCGTTT 169969 ||| |||| || || || | |||||| | ||| | | ||||||| ||| || ||| Sbjct 53484 ACAATAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTT 53425 Query 169970 GATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAG 170029 | || || | || | |||||||| |||||||| || |||| ||| ||||| || Sbjct 53424 AACATAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAA 53365 Query 170030 ATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCT 170089 ||||| | |||| ||||| | || ||||| | || || || || || ||||| || Sbjct 53364 ATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCA 53305 Query 170090 GTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCT 170149 | | ||| | || | || |||| || |||| || |||| || || ||||| Sbjct 53304 ATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCC 53245 Query 170150 TACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCT 170207 || || ||| | ||| || ||| | |||||| ||||||| ||||||||||| |||| Sbjct 53244 TATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq5622 Length=97820 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 170192 GAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTG 170251 ||||||||||| |||||||||||||| | || || |||||||| || |||| ||| || Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 170252 GCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGT 170311 ||| || |||||||| ||||||||| | || ||||| || || ||||| || | || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 170312 AACGCACT 170319 ||||| || Sbjct 54854 AACGCTCT 54847 >seq345864 Length=152 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 169763 TGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAA 169822 ||||| |||||||| |||||||| ||||||||||| | ||| | ||||| | ||| Sbjct 15 TGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCAA 74 Query 169823 GGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGG 169872 || ||||| |||||||| | || || ||||| ||||||||||| || || Sbjct 75 GGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGG 124 >seq214152 Length=122 Score = 89.7 bits (98), Expect = 6e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 ||||| | |||||||| |||| |||||||| ||||||||| | || ||||||||||| Sbjct 1 GTAGCTTTGCATGGTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCT 60 Query 169664 CGTCTTATTGGCA-TCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATT 169722 || || || | | || |||||||| || ||||| || ||||| |||||| | || || Sbjct 61 CG-CTCTGTGCAATTACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCCGTTTT 119 Query 169723 TGT 169725 ||| Sbjct 120 TGT 122 >seq13424 Length=38927 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 || || |||||||||||||| ||| ||||| || || || || || || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 168640 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 168674 || || |||||||| || || |||||||||||||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 6244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570510342538200