Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq862 145 8e-30 seq524375 132 5e-26 seq7860 116 4e-21 seq345864 111 2e-19 seq13424 87.8 2e-12 >seq862 Length=327473 Score = 145 bits (160), Expect = 8e-30 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 165765 TGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAG 165824 |||||| ||| |||| | ||| || ||||||| ||| |||| |||||| | | | ||| Sbjct 255135 TGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAG 255194 Query 165825 ATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACT 165884 ||||||| | ||||||||| ||| | || || || | ||||||| |||||||| || | Sbjct 255195 ATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATT 255254 Query 165885 CAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGA 165944 ||||||| || | ||||| || ||||| || ||||| || ||| | ||| ||||| Sbjct 255255 CAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAAC 255314 Query 165945 GGTGGTTGCATTTCTTTATGCTGTTTGT 165972 ||||| |||||||||||| | ||||| Sbjct 255315 ATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq524375 Length=364 Score = 132 bits (146), Expect = 5e-26 Identities = 128/162 (79%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||||||||||| || ||| | |||||||| || | |||||||| || ||||| Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163903 ||||||||||| || | | |||||| || || || || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACC-TCCGTGTTTATTATTGCCTTCATCGCTGCTCC 314 Query 163904 CCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTC 163945 |||||||||||||||||||| ||||| |||||| | || || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq7860 Length=10955 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 165467 CAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTC 165526 ||| | || || || ||| ||||||| || |||||||| ||||| | ||||| |||||| Sbjct 6691 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTC 6632 Query 165527 ATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGC 165585 ||| | ||||| |||||| | || || ||| || | | || || || ||||| || || Sbjct 6631 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGC 6573 Query 165586 GTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATC 165645 ||||||| ||| || |||||||||||| || || | || || || || ||||| || Sbjct 6572 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTC 6513 Query 165646 GAGTTGGTTTTTCGCTCC 165663 ||||||| || || || Sbjct 6512 TGGTTGGTTCTTTGCGCC 6495 >seq345864 Length=152 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 165638 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTT 165697 |||||||| |||||||||| |||||| ||| || || |||||||||||| | ||| || Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 165698 CTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCA 165757 | || | ||||| |||||||||||||| | || || || |||||||||||||| || Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 165758 GGTATCCTGGGTGGTGCATTGCTTTCTGC 165786 ||| | | || | ||| | |||| ||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq13424 Length=38927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 164509 TGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCAT 164568 ||||||||||||| ||| ||||| || || ||||| || || |||||||| || || | Sbjct 6331 TGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTT 6272 Query 164569 GGCCTGTTGTTGGCATCTGGTTCACCGC 164596 ||||||| || || |||||||||||||| Sbjct 6271 GGCCTGTAGTAGGTATCTGGTTCACCGC 6244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553082610612600