Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq54748 122 1e-22 seq31749 104 3e-17 seq2941 93.3 5e-14 seq7860 91.5 2e-13 seq31735 89.7 6e-13 seq5622 89.7 6e-13 >seq54748 Length=1350 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 159611 TTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAG 159670 ||||||| |||||||||||||||| || | || ||||| || | || || ||| | | Sbjct 522 TTGTTCACAAGAATGGTGGTCAGGTCTACATGGACGGTGCCAACATGAACGCTCAGATTG 463 Query 159671 GTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACAT 159730 |||| || |||| |||||| ||||| || ||| | ||| | || ||||| | Sbjct 462 GTCTTTGCTCTCCTGGTGAAATTGGTGCCGATGTCTGCCATTTGAACCTTCACAAGACCT 403 Query 159731 TCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATC 159790 |||||||||| || || ||||| |||||||| || |||||||||||||| ||| | || | Sbjct 402 TCTGTATTCCTCACGGTGGTGGTGGTCCTGGTGTCGGTCCTATTGGTGTCGCAGAGCACC 343 Query 159791 TCACACCATT 159800 || | || || Sbjct 342 TCGCTCCTTT 333 >seq31749 Length=37690 Score = 104 bits (114), Expect = 3e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 158447 GGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACA 158506 ||||||| ||||| ||||||||||| || || |||||||||||||| | |||| Sbjct 10802 GGTTTGGAGTTCCTCCTGGATACGGAGGACCCCACGCTGCATTCTTTGCTGTCTCCGACA 10861 Query 158507 AGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGAT-AGCGAAGGTAAT 158565 || ||| | ||||| || ||| | | || |||| | |||| ||| | || || Sbjct 10862 AGCTCAAGCGCAAGATCCCGGGCCGTCTCGTCGGTCTGAGCAAAGATCAGC-AGGGCAAG 10920 Query 158566 AAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACC 158625 ||| ||| || | || || ||||||||||||||||| ||| | ||||| || || || Sbjct 10921 CCAGCCTACCGACTTGCTCTGCAGACTAGAGAGCAGCACATCCGGAGAGAGAAGGCTACG 10980 Query 158626 AGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATG 158664 |||||||| || || || || ||| |||| || ||| Sbjct 10981 TCAAACATCTGTACTGCCCAGGCCCTGTTGGCAAACATG 11019 >seq2941 Length=104135 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || || || || ||||| || | ||||| |||||||| |||||||||||||| || Sbjct 54092 TGGAGCGGACGTTTGCCATCTCAATCTCCATAAAACATTCTGCATTCCACATGGAGGAGG 54151 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 ||||||||| | |||||||||||||| ||||| | |||||||| Sbjct 54152 TGGTCCTGGCATGGGTCCTATTGGTGTGAAGAAACACTTAGCACCATTT 54200 >seq7860 Length=10955 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 173215 CGTTGGTTACAACTCGGAGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTC 173274 ||||||| ||| | || || || |||| ||||| || | || || | |||||||| Sbjct 6700 CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTA 6641 Query 173275 ATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAAC 173334 |||||||||||| | ||||| ||||| | || || ||| | ||||||| || Sbjct 6640 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAAT 6581 Query 173335 GCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTA 173394 ||| |||||||||||||| || || || || | | || || || || |||||| Sbjct 6580 GCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTA 6521 Query 173395 GGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGT 173432 || ||| |||||||||| || ||| || ||||| Sbjct 6520 GGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 6483 >seq31735 Length=860 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 157917 AGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCA 157976 |||||| || |||| || || ||||| ||| | ||||||||| ||||||||| || || Sbjct 499 AGTCATTAAGAGAAATGTCCTCGAGAACCCTGGCTGGTACACAAGTTACACTCCATACCA 440 Query 157977 AGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGA 158036 | ||||||| ||||||||||||||| | | |||| | ||| || | | || Sbjct 439 ACCTGAGATTAGTCAGGGAAGATTGGAGTCCCTGCTCAACTTCCAGACCATGGAATCTGA 380 Query 158037 ACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGA 158096 || || || || | || ||||||||||| | | ||||| | || || || ||||| Sbjct 379 CCTGACCGGCCTGGCCATCTCAAACGCATCTGTCCTCGATGAGCCCACCGCTGCTGCAGA 320 Query 158097 AGCAATG 158103 || ||| Sbjct 319 GGCCATG 313 >seq5622 Length=97820 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 173857 GAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATG 173916 || || |||||||||||||| || || | ||| | ||||||||||| | || |||||| Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 173917 TCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGT 173976 || || ||||||||| ||||| ||| | |||| || || || || |||| | || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 173977 AACGCACTTTAA 173988 ||||| |||||| Sbjct 54854 AACGCTCTTTAA 54843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583994271524400