Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq7860 132 5e-26 seq345864 129 6e-25 seq524375 114 1e-20 seq13424 91.5 2e-13 >seq7860 Length=10955 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 163894 CAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTC 163953 ||| | || || || |||| |||||| || |||||||| || |||| || || |||||| Sbjct 6691 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTC 6632 Query 163954 ATGCTTCGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATTGC 164012 ||| | || ||||||||||||||||| ||| || | | |||| || ||||| || || Sbjct 6631 ATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATCGC 6573 Query 164013 TTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATC 164072 ||||||| ||| |||||||| || ||| ||| || | || || || || ||||| || Sbjct 6572 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTC 6513 Query 164073 AAGTTGGTTCTTCGCTCCATCTTTTGGAGT 164102 |||||||||| || || |||||| || Sbjct 6512 TGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 6483 >seq345864 Length=152 Score = 129 bits (142), Expect = 6e-25 Identities = 107/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 164065 GGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTC 164124 ||||||||| ||||||| || |||||| ||||||||| |||||||||||| | ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 164125 TTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCT 164184 || || | ||||| || ||||||||||| | ||||| |||||||||||||| || ||| Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 164185 GGTATACTAGG 164195 ||| || |||| Sbjct 123 GGTGTATTAGG 133 >seq524375 Length=364 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || || ||| | |||||| | ||||| || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 162545 |||||||||||||| || |||||||| || || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 163161 || || ||||||||||||||||| ||||| || || ||||| || || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 163162 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 163196 || || |||||||| || || |||||||||||||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 6244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553737262833000