Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq524375 147 2e-30 seq7860 134 2e-26 seq4549 134 2e-26 seq345864 125 8e-24 seq862 122 1e-22 seq5622 100 3e-16 >seq524375 Length=364 Score = 147 bits (162), Expect = 2e-30 Identities = 132/163 (81%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||||| ||||||||||||||| | ||||| || || |||||||||| || ||||| Sbjct 195 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 254 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 ||||||||||| | | | |||||| || || || || || |||||| ||| ||||| Sbjct 255 AATGATCCCTACCCTATTGACTGCAACC-TCCGTGTTTATTATTGCCTTCATCGCTGCTC 313 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTC 167248 ||||||||||||||||||||||||| || || ||| |||| || Sbjct 314 CTCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq7860 Length=10955 Score = 134 bits (148), Expect = 2e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 168731 ACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCA 168790 || ||||||||| | ||||||||| | || || || ||| ||||||| || ||||| Sbjct 6716 ACTAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCA 6657 Query 168791 CGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCG 168849 ||| ||||| | ||||| ||||||||| | ||||| |||||||| || || ||| || Sbjct 6656 CGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCA 6597 Query 168850 GTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 168909 | | || || || ||||| || || ||||||| ||| || |||||||||||| || | Sbjct 6596 AT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTAT 6538 Query 168910 TTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 168952 | | || || || || ||||| || ||||||| || || || Sbjct 6537 TCTTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq4549 Length=62305 Score = 134 bits (148), Expect = 2e-26 Identities = 209/298 (70%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 169089 ACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAG---CAAATACTTTCAAAGCATTT 169145 ||| |||| |||||| | | | |||||| ||| | | ||||||| ||| || ||| Sbjct 53484 ACAATAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTT 53425 Query 169146 GACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAG 169205 ||| ||||| | | | || ||||||||||| || || |||| || ||||| || Sbjct 53424 AACATAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAA 53365 Query 169206 ATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCT 169265 ||||||| |||| || |||| | ||||| || |||||||| | ||||| || Sbjct 53364 ATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCA 53305 Query 169266 GTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCT 169325 | | ||| | || | || | | || || ||||||| |||| ||||| ||||| Sbjct 53304 ATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCC 53245 Query 169326 TATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCT 169383 |||||||| ||| ||||| ||| | |||||| ||||||| || |||||||| |||| Sbjct 53244 TATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq345864 Length=152 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 168927 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTT 168986 |||||||| |||||||||| |||||| ||| || || ||||||||||||| ||| || Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 168987 CTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCA 169046 | || | ||||| ||||||||||||||||| || || || |||||||||||||| || Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 169047 GGTATTTTGGGAGGAGCCTTGCTTTCTGC 169075 ||| | || |||| || | |||| ||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq862 Length=327473 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 169047 GGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTG 169106 ||| | ||||| | || |||| | ||| |||||||||| ||| |||| |||||| | Sbjct 255128 GGTGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTA 255187 Query 169107 TATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAG 169166 | | |||||||||| |||||||| ||| | || || || ||||| | || || Sbjct 255188 TTTGAAGATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAA 255247 Query 169167 ACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGT 169226 || ||||||||||| || | ||||| || ||||| || |||||||| ||| | || Sbjct 255248 ACTTATTCAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCC 255307 Query 169227 AATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGT 169261 ||||| ||||| |||||||||||| | ||||| Sbjct 255308 AATAAACATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq5622 Length=97820 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 169368 GAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTA 169427 || |||||||| ||||||||||| || | || || || |||||| || |||| ||| | Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 169428 GCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGT 169487 ||| || |||||||||||||| ||| || | ||||||||||| || || ||||| || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 169488 AATGCCCT 169495 || || || Sbjct 54854 AACGCTCT 54847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556740400446000