Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq7860 178 2e-39 seq4549 143 3e-29 seq862 131 2e-25 seq345864 116 4e-21 seq524375 105 8e-18 seq5622 93.3 5e-14 seq13424 91.5 2e-13 >seq7860 Length=10955 Score = 178 bits (196), Expect = 2e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 |||||| ||| || ||||| ||| | || || || |||| |||||| || |||||||| Sbjct 6713 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 6654 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 || |||| || || ||||||||| | || || |||||||||||||| | || | Sbjct 6653 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATT 6594 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| || || ||||||| ||| |||||||||||||| ||||||| | Sbjct 6593 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTT 6534 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGT 183662 || |||||||| ||||||||| ||||||||||| |||||||| || || Sbjct 6533 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 6483 >seq4549 Length=62305 Score = 143 bits (158), Expect = 3e-29 Identities = 211/298 (71%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 183787 ACAGTAGAGAATACATTGTATGAAGATGGAGAACAAG---CAAACACATTCAAGGCATTT 183843 ||| |||| ||||| || | |||||||| || | | |||| |||||| || ||| Sbjct 53484 ACAATAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTT 53425 Query 183844 GATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAA 183903 | ||||||| || | || ||||| ||||| || || || | || ||||| ||| Sbjct 53424 AACATAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAA 53365 Query 183904 ATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCT 183963 ||||| | |||||| ||| | |||| ||||||| ||||||||||| || ||||| || Sbjct 53364 ATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCA 53305 Query 183964 GTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCT 184023 | | ||| | || | || |||| || |||| || |||| || || ||||| Sbjct 53304 ATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCC 53245 Query 184024 TATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCT 184081 ||||| || | |||||| ||| | |||||| ||||||| ||||||||||| |||| Sbjct 53244 TATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq862 Length=327473 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 183770 GTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACA 183829 ||||||| ||||||| || |||| ||||| || | ||||||||| || ||||| | Sbjct 255153 GTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATA 255212 Query 183830 CATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATC 183889 ||||| | || || | | ||||||| ||||| || ||||| ||||| || | || | Sbjct 255213 CATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACC 255272 Query 183890 GTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTA 183949 | || ||||| |||||||| ||| || | ||| |||||| | |||||| || ||||||| Sbjct 255273 GCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACATTGGTTACATTTCTTTA 255332 Query 183950 TGTTGTTTGT 183959 |||| ||||| Sbjct 255333 TGTTTTTTGT 255342 >seq345864 Length=152 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 183637 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAG 183696 ||||| ||||| || ||||| || || ||||||||||| | ||| | ||||| | || Sbjct 15 TGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCAA 74 Query 183697 GGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGA 183756 |||||||| |||||||| ||||||| |||||||||||||| || |||||| || ||||| Sbjct 75 GGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAGGA 134 Query 183757 GGAGCACTACTCAGTGC 183773 | || || || |||| Sbjct 135 GCTGCTCTTCTTTGTGC 151 >seq524375 Length=364 Score = 105 bits (116), Expect = 8e-18 Identities = 122/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||||| |||||||| || | || || || || |||||||||||||||| || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| || || ||| | |||||| || || || || |||| ||| | || || || Sbjct 256 ATGATCCCTACCCTATTGACTGCAACC-TCCGTGTTTATTATTGCCTTCATCGCTGCTCC 314 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTC 181954 |||||| || ||||| |||||||| || || || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq5622 Length=97820 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 184066 GAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTA 184125 ||||||||||| |||||||| || || | ||| | |||||||| | |||| ||| | Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 184126 GCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGC 184185 ||| || |||||||| ||||| || ||||||| || |||||||| |||| | || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 184186 AATGCTCTTTGATG 184199 || ||||||| ||| Sbjct 54854 AACGCTCTTTAATG 54841 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 182511 GGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 182570 || || |||||||||||||| || ||||| || || ||||| || || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 182571 GCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGG 182625 || || |||||||| || || |||||||||||||| | ||| || ||| |||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607475947527000