Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq7860 132 5e-26 seq862 132 5e-26 seq4549 131 2e-25 seq345864 116 4e-21 seq524375 107 2e-18 seq5622 107 2e-18 seq13424 93.3 5e-14 >seq7860 Length=10955 Score = 132 bits (146), Expect = 5e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 166412 AGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGG 166471 ||||||||| | ||||| ||| | || || || ||| | ||||||||||||||||| Sbjct 6713 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 6654 Query 166472 TGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTA 166530 ||||||| ||||| ||||||||| | || || |||||| | ||||| ||| || Sbjct 6653 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAAT 6595 Query 166531 TTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTC 166590 | || || || ||||||||||| || |||| ||| |||||||| || ||| ||| || Sbjct 6594 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCT 6535 Query 166591 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 166630 | || || || || ||||| || ||||||| || || || Sbjct 6534 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq862 Length=327473 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 166734 GGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGAT 166793 |||| ||| |||| | ||| || ||||||| ||| |||| || ||| | | | ||||| Sbjct 255137 GGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGAT 255196 Query 166794 GGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCA 166853 ||||| |||||||| ||| | || | || | ||||||| |||||||| |||||| Sbjct 255197 GGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCA 255256 Query 166854 ATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGG 166913 ||||| || | ||||||| |||||| || ||||| || ||| | ||| ||||| Sbjct 255257 ATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACAT 255316 Query 166914 TGGTTGCATTTCTTTATGCTGTTTGT 166939 ||||| |||||||||||| | ||||| Sbjct 255317 TGGTTACATTTCTTTATGTTTTTTGT 255342 >seq4549 Length=62305 Score = 131 bits (144), Expect = 2e-25 Identities = 208/298 (70%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 166767 ACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGG---CAAATACTTTCAAGGCATTC 166823 ||| |||| || ||| | | | |||||| ||| | | ||||||| ||| || || Sbjct 53484 ACAATAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTT 53425 Query 166824 GACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAG 166883 || ||||||| || |||| ||||||||||| || || |||| || |||||| || Sbjct 53424 AACATAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAA 53365 Query 166884 ATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCT 166943 ||||| | |||| ||| |||| | ||||| || |||||||| | ||||| || Sbjct 53364 ATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCA 53305 Query 166944 GTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCT 167003 | | ||| | || | || | | || || ||||||| |||| ||||| ||||| Sbjct 53304 ATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCC 53245 Query 167004 TATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCT 167061 |||||||| ||| |||||| | | |||||| | |||||||| ||||| || |||| Sbjct 53244 TATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq345864 Length=152 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 166605 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTC 166664 |||||||| |||||||||| |||||| ||| || || ||||||||||||| ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 166665 CTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCA 166724 | || | ||||| ||||| ||||||||||| ||||| || |||||||||||||| || Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 166725 GGTATTCTCGGTGGTGCATTGCTTTCTGC 166753 ||| | | || | ||| | |||| ||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq524375 Length=364 Score = 107 bits (118), Expect = 2e-18 Identities = 120/157 (76%), Gaps = 10/157 (6%) Strand=Plus/Plus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||||| ||||| || ||| | ||||| ||||| |||||||||| |||||||| Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 164824 ATGATCCC----CTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTG 164878 |||||||| || || || || || | || ||||||| ||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACT----GCAACC-TCCGTGTTTATTATTGCCTTCATCGCTG 310 Query 164879 CTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGT 164915 |||| ||||||||||| |||||||| ||||| ||||| Sbjct 311 CTCCTCCTGTGGACATCGATGGTATCCGTGAGCCTGT 347 >seq5622 Length=97820 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 167041 ATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTT 167100 || |||| ||||| || ||||| ||||| || | ||| || ||||| ||||| || ||| Sbjct 54979 ATACTGAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTT 54920 Query 167101 GGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTA 167160 |||||||| || |||||||||||||| | | |||||||||| |||||||| || Sbjct 54919 GGATGGCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCC 54860 Query 167161 GAGGTAACGCTCTCTAA 167177 | || |||||||| ||| Sbjct 54859 GTGGAAACGCTCTTTAA 54843 >seq13424 Length=38927 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 165490 ATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 165549 || |||||||| || ||||| ||||| ||||| | || |||||||| || || ||| Sbjct 6329 ATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGG 6270 Query 165550 CCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGG 165595 |||||||| |||||||||||||| ||| | ||| | ||||| |||| Sbjct 6269 CCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559772139369600