Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq511598 132 4e-26 seq55281 91.5 1e-13 >seq511598 Length=303 Score = 132 bits (146), Expect = 4e-26 Identities = 194/271 (72%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATG--TCCGTGTACTCTGCTCCGA 30172 ||||| || || ||| | | | ||||||| || || || || || ||||| || |||| Sbjct 278 AGCTGGTCGACGCCCTTGCTCTGGTAGTCT-CCGTC-TGCATCGGTATACTCGGCACCGA 221 Query 30173 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30232 |||| ||||||||||| ||||| || |||||||| || || ||| | ||||| | | Sbjct 220 AATGTCTCCACTGGAAGCCGTAGACGGGTCCCAGATCACCTTCTCTGCGGTGCTGCAGTC 161 Query 30233 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30292 ||||| | | |||| | |||| || ||| |||||||||| | | | || | Sbjct 160 CCCTCGACTTGAGAAAGGCCTTGGATCCATTGCCGTCCCAGATGTGAATGTCTCGGTCTG 101 Query 30293 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30352 || ||||||| | |||| | || ||||||||||||||||||||||| ||| | Sbjct 100 TCAGGACTTTGGAATCTGTGCAGCCAGCGACGAACCACAGCAGCTCCTCCATGACTCCTC 41 Query 30353 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||||||||| | ||| ||||| | |||||| Sbjct 40 GCCAAAAGACTCGCTTCGTCGTCAAGAGGGG 10 >seq55281 Length=2393 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 29794 TGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGT-GGAC 29852 |||||| | ||||| |||||||||||| |||||| || |||||||||| ||| ||| Sbjct 312 TGAGTCATGAGCGGCTCCACGTGATCCTTGTAGACATGCGCGTCTCCCA-TTTGTAGGAT 370 Query 29853 AAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCT 29912 |||||| ||||| ||||||| || || ||||||| || | || |||||| Sbjct 371 AAACTCGTGAGGTTCAGTGTCGGTGACATGGGCGATCATGTGTGTCAACAGCGAGTAGGA 430 Query 29913 GGCGATGTTAAAGGGTACCCCGAGCCC 29939 |||||||| |||||||| || || || Sbjct 431 AGCGATGTTGAAGGGTACGCCTAGTCC 457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105 |||||||| |||| || ||| || || | || ||||||||| |||| || | | Sbjct 650 GGGTTCCAAGCGCTCATGATTATCCGTCGATCCGTCGGGTTGTTCTTGATCTTATCGATG 709 Query 30106 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTC 30164 | | |||| |||||||||||| || | || || | | | || |||| ||||| Sbjct 710 ACCTGCTGCAACTGATCCACCCCTTGACCAGTATAATCGTCCTCGCACGTCC-CGTACTT 768 Query 30165 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30224 ||| |||||||| ||||| ||||| ||||| || || || || ||||| || | || Sbjct 769 TGCCCCGAAATGTCTCCATTGGAATCCGTAGACGGGACCGAGATCTCCGACTCGTCGATG 828 Query 30225 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30284 ||| || ||||||||| | || | || ||||| | ||||| ||| || || Sbjct 829 ACCGAGCCCGATCTTGTCCAGGTATTCACGAGATCCGTTCCCTTCCCAAATCCCAACTCC 888 Query 30285 CTTCTCG 30291 ||| ||| Sbjct 889 CTTGTCG 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405869048398295